[MacPorts] #25490: atlas
#25490: atlas ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.1 Keywords: | Port: ---------------------------------+------------------------------------------ Problem with the atlas dependency on lapack. Receive the following error messages: sudo port install atlas Password: ---> Computing dependencies for atlas ---> Verifying checksum(s) for atlas Error: Checksum (md5) mismatch for lapack.tgz Error: Checksum (sha1) mismatch for lapack.tgz Error: Checksum (rmd160) mismatch for lapack.tgz Error: Target org.macports.checksum returned: Unable to verify file checksums Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log Error: Status 1 encountered during processing. -- Ticket URL: <http://trac.macports.org/ticket/25490> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------ Changes (by ram@…): * owner: macports-tickets@… => jameskyle@… * version: 1.9.1 => * port: => atlas Old description:
Problem with the atlas dependency on lapack. Receive the following error messages:
sudo port install atlas Password: ---> Computing dependencies for atlas ---> Verifying checksum(s) for atlas Error: Checksum (md5) mismatch for lapack.tgz Error: Checksum (sha1) mismatch for lapack.tgz Error: Checksum (rmd160) mismatch for lapack.tgz Error: Target org.macports.checksum returned: Unable to verify file checksums Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log Error: Status 1 encountered during processing.
New description: Problem with the atlas dependency on lapack. Receive the following error messages: {{{ sudo port install atlas Password: ---> Computing dependencies for atlas ---> Verifying checksum(s) for atlas Error: Checksum (md5) mismatch for lapack.tgz Error: Checksum (sha1) mismatch for lapack.tgz Error: Checksum (rmd160) mismatch for lapack.tgz Error: Target org.macports.checksum returned: Unable to verify file checksums Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log Error: Status 1 encountered during processing. }}} -- Comment: Don't forget to use wiki formatting, specify the port, and cc the maintainer. Have you followed the FAQ on checksum errors: http://trac.macports.org/wiki/FAQ#checksums -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------ Comment(by jwmarineiii@…): A new version of lapack(3.2.2) was released on June 30, 2010. The md5 checksum in the portfile equals the md5 checksum of the previous version of lapack(3.2.1) that was released on April 17, 2009. The current and prior versions of lapack can be downloaded at http://www.netlib.org/lapack/index.html. -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS
checksums disagree in the log file, as shown below (from /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log) :msg:fetch ---> Attempting to fetch atlas3.8.3.tar.bz2 from http://distfiles.macports.org/a tlas :info:fetch ---> lapack.tgz doesn't seem to exist in /opt/local/var/macports/distfiles/atla s :msg:fetch ---> Attempting to fetch lapack.tgz from http://www.netlib.org/lapack :msg:fetch ---> Verifying checksum(s) for atlas :debug:checksum checksum phase started at Fri Jul 2 09:15:55 EDT 2010 :debug:checksum Executing org.macports.checksum (atlas) :info:checksum ---> Checksumming atlas3.8.3.tar.bz2 :debug:checksum Correct (md5) checksum for atlas3.8.3.tar.bz2 :debug:checksum Correct (sha1) checksum for atlas3.8.3.tar.bz2 :debug:checksum Correct (rmd160) checksum for atlas3.8.3.tar.bz2 :info:checksum ---> Checksumming lapack.tgz :error:checksum Checksum (md5) mismatch for lapack.tgz :info:checksum Portfile checksum: lapack.tgz md5 a3202a4f9e2f15ffd05d15dab4ac7857 :info:checksum Distfile checksum: lapack.tgz md5 37369f490a4c26d6e6551470ce5ad7d1 :error:checksum Checksum (sha1) mismatch for lapack.tgz :info:checksum Portfile checksum: lapack.tgz sha1 c75223fdef3258c461370af5d2b889d580d7f38a :info:checksum Distfile checksum: lapack.tgz sha1 335cfd6a07988149556db2544118c5b0ed972062 :error:checksum Checksum (rmd160) mismatch for lapack.tgz :info:checksum Portfile checksum: lapack.tgz rmd160 e8fabba2fdd944afbc02a83599cf45a0d721030d :info:checksum Distfile checksum: lapack.tgz rmd160 a4bd4ef86ea6977558a4c5595d8628c00f3c5247 :info:checksum The correct checksum line may be: :info:checksum checksums atlas3.8.3.tar.bz2 \ md5 6c13be94a87178e7582111c08e9503bc \ sha1 c7546210df4796457d9e96a00444adc4c0f2e77f \ rmd160 0425e630d9d0c5b7aae81427a41b7eaa18447e90 \ lapack.tgz \ md5 37369f490a4c26d6e6551470ce5ad7d1 \ sha1 335cfd6a07988149556db2544118c5b0ed972062 \ rmd160 a4bd4ef86ea6977558a4c5595d8628c00f3c5247 :error:checksum Target org.macports.checksum returned: Unable to verify file checksums MacPorts wrote:
#25490: atlas checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------
Comment(by jwmarineiii@…):
A new version of lapack(3.2.2) was released on June 30, 2010. The md5 checksum in the portfile equals the md5 checksum of the previous version of lapack(3.2.1) that was released on April 17, 2009. The current and prior versions of lapack can be downloaded at http://www.netlib.org/lapack/index.html.
-- Ticket URL: <http://trac.macports.org/ticket/25490#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS _______________________________________________ macports-tickets mailing list macports-tickets@lists.macosforge.org http://lists.macosforge.org/mailman/listinfo.cgi/macports-tickets
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#25490: atlas checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------ Comment(by ram@…): The attached patch should fix this -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------ Comment(by michaelld@…): That diff (as checked in in r69457) doesn't work for me. I'm attaching YA diff that does. -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:5> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------ Changes (by ram@…): * cc: ram@… (added) Comment: Looks like theres been a stealth update of lapack :-( -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:7> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas: lapack.tgz checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------ Changes (by ryandesign@…): * cc: ryandesign@… (added) -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:8> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas: lapack.tgz checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------ Comment(by ryandesign@…): If anybody's having trouble applying this patch, the instructions for doing so are to download the patch (presumably to your Downloads folder) and then run: {{{ cd $(port dir atlas) sudo patch Portfile < ~/Downloads/patch-Portfile-lapack-checksums.diff }}} Works for me. -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:9> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas: lapack.tgz checksum error ---------------------------------+------------------------------------------ Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: atlas ---------------------------------+------------------------------------------ Comment(by skiptracer@…): Applying the patch file with 'patch' failed for me: {{{ patching file Portfile Hunk #1 FAILED at 41. 1 out of 1 hunk FAILED -- saving rejects to file Portfile.rej }}} I had to apply it manually. After I had done that, I got the following error: {{{ Error: Target org.macports.configure returned: error copying "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/lapack-3.2.1": no such file or directory }}} I had to open the Portfile again and change line 12: {{{ set lapackversion 3.2.1 }}} to {{{ set lapackversion 3.2.2 }}} Try the newly attached patch (patch-Portfile-lapack-checksums- version.diff). This is my first ever patch, so pardon me if I made a mistake. -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:10> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas: lapack.tgz checksum error ----------------------------------+----------------------------------------- Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: Resolution: fixed | Keywords: Port: atlas | ----------------------------------+----------------------------------------- Changes (by ryandesign@…): * status: new => closed * cc: rmsfisher@… (added) * resolution: => fixed Comment: Replying to [comment:10 skiptracer@…]:
Applying the patch file with 'patch' failed for me:
Ryan Stonecipher-Fisher already fixed this problem in r69509 on 2010-07-08. All you need to do is `sudo port selfupdate` to get it.
I had to open the Portfile again and change line 12:
Then your Portfile predated the change made in r69457 as well. Please update. -- Ticket URL: <http://trac.macports.org/ticket/25490#comment:11> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas: lapack.tgz checksum error ----------------------------------+----------------------------------------- Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: reopened Priority: Normal | Milestone: Component: ports | Version: Resolution: | Keywords: Port: atlas | ----------------------------------+----------------------------------------- Changes (by mark.swanson.sw@…): * status: closed => reopened * resolution: fixed => Comment: Nov 14, 2010 3.3.0 has been released so macports needs a checkum update. This is just a FYI... -- Ticket URL: <https://trac.macports.org/ticket/25490#comment:12> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas: lapack.tgz checksum error ----------------------------------+----------------------------------------- Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: reopened Priority: Normal | Milestone: Component: ports | Version: Resolution: | Keywords: Port: atlas | ----------------------------------+----------------------------------------- Comment(by mark.swanson.sw@…): Oops - this has already been addressed by several patches. Here's one: https://trac.macports.org/attachment/ticket/27319/patch-atals- lapack.3.3.0.diff Please close this. Sorry for the noise. -- Ticket URL: <https://trac.macports.org/ticket/25490#comment:13> MacPorts <http://www.macports.org/> Ports system for Mac OS
#25490: atlas: lapack.tgz checksum error ----------------------------------+----------------------------------------- Reporter: sjbradtke@… | Owner: jameskyle@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: Resolution: fixed | Keywords: Port: atlas | ----------------------------------+----------------------------------------- Changes (by macsforever2000@…): * status: reopened => closed * resolution: => fixed -- Ticket URL: <https://trac.macports.org/ticket/25490#comment:14> MacPorts <http://www.macports.org/> Ports system for Mac OS
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