#37277: shogun: Undefined symbols: __gfortran_compare_string __gfortran_concat_string -----------------------------+-------------------------------- Reporter: claire.zaidi@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Resolution: | Keywords: Port: shogun | -----------------------------+-------------------------------- Changes (by ryandesign@…): * keywords: moutain lion => Old description:

Hi,

I am trying to install SHOGUN with Moutain Lion 10.8.2, MacPorts 2.1.2, Xcode 4.5.2, python27. I followed the instructions: sudo port selfupdate sudo port install swig -php5 -ruby -perl +python sudo port install shogun

I saw that I am not the only one to have this problem but don't find the solution.

Here is the error (I attach the log file)

---> Computing dependencies for shogun ---> Fetching archive for shogun ---> Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/shogun ---> Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/shogun ---> Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from http://packages.macports.org/shogun ---> Fetching distfiles for shogun ---> Verifying checksum(s) for shogun ---> Extracting shogun ---> Applying patches to shogun ---> Configuring shogun ---> Building shogun

Error: org.macports.build for port shogun returned: command execution failed Please see the log file for port shogun for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port shogun failed

Thanks

New description: Hi, I am trying to install SHOGUN with Moutain Lion 10.8.2, MacPorts 2.1.2, Xcode 4.5.2, python27. I followed the instructions: {{{ sudo port selfupdate sudo port install swig -php5 -ruby -perl +python sudo port install shogun }}} I saw that I am not the only one to have this problem but don't find the solution. Here is the error (I attach the log file) {{{ ---> Computing dependencies for shogun ---> Fetching archive for shogun ---> Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/shogun ---> Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/shogun ---> Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from http://packages.macports.org/shogun ---> Fetching distfiles for shogun ---> Verifying checksum(s) for shogun ---> Extracting shogun ---> Applying patches to shogun ---> Configuring shogun ---> Building shogun Error: org.macports.build for port shogun returned: command execution failed Please see the log file for port shogun for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port shogun failed }}} Thanks -- Comment: The log says: {{{ :info:build Undefined symbols for architecture x86_64: :info:build "__gfortran_compare_string", referenced from: :info:build _ilaenv_ in liblapack.a(ilaenv.o) :info:build "__gfortran_concat_string", referenced from: :info:build _dgesvd_ in liblapack.a(dgesvd.o) :info:build _dormbr_ in liblapack.a(dormbr.o) :info:build _dormlq_ in liblapack.a(dormlq.o) :info:build _dormqr_ in liblapack.a(dormqr.o) :info:build ld: symbol(s) not found for architecture x86_64 }}} We should probably start by trying to [ticket:33205 update shogun to 2.0.0] and then see where we are. -- Ticket URL: <https://trac.macports.org/ticket/37277#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS

#37277: shogun: Undefined symbols: __gfortran_compare_string __gfortran_concat_string -----------------------------+-------------------------------- Reporter: claire.zaidi@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Resolution: | Keywords: Port: shogun | -----------------------------+-------------------------------- Comment (by ryandesign@…): To test a Portfile attached to a ticket, you must * download the file * if necessary rename it so that its name is exactly "Portfile" * `cd` to the directory you put it in * type `sudo port install` (without specifying a port name) -- Ticket URL: <https://trac.macports.org/ticket/37277#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS

#37277: shogun: Undefined symbols: __gfortran_compare_string __gfortran_concat_string -----------------------------+------------------------- Reporter: claire.zaidi@… | Owner: jameskyle@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Resolution: | Keywords: Port: shogun | -----------------------------+------------------------- Changes (by jmr@…): * owner: macports-tickets@… => jameskyle@… Comment: Please remember to Cc the maintainer. -- Ticket URL: <https://trac.macports.org/ticket/37277#comment:5> MacPorts <http://www.macports.org/> Ports system for Mac OS