[MacPorts] #18748: new doxygen port fails to link
#18748: new doxygen port fails to link --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: new Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- {{{ udo port install doxygen ---> Fetching doxygen ---> Attempting to fetch doxygen-1.5.8.src.tar.gz from http://distfiles.macports.org/doxygen ---> Verifying checksum(s) for doxygen ---> Extracting doxygen ---> Configuring doxygen ---> Building doxygen Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8" && make all " returned error 2 Command output: ar cq ../lib/libdoxygen.a ../objects/ce_lex.o ../objects/ce_parse.o ../objects/classdef.o ../objects/classlist.o ../objects/cmdmapper.o ../objects/code.o ../objects/commentcnv.o ../objects/commentscan.o ../objects/cppvalue.o ../objects/debug.o ../objects/defgen.o ../objects/declinfo.o ../objects/defargs.o ../objects/define.o ../objects/definition.o ../objects/diagram.o ../objects/dirdef.o ../objects/docparser.o ../objects/docsets.o ../objects/doctokenizer.o ../objects/dot.o ../objects/doxygen.o ../objects/entry.o ../objects/filedef.o ../objects/filename.o ../objects/formula.o ../objects/ftvhelp.o ../objects/fortrancode.o ../objects/fortranscanner.o ../objects/groupdef.o ../objects/htags.o ../objects/htmldocvisitor.o ../objects/htmlgen.o ../objects/htmlhelp.o ../objects/indexlog.o ../objects/image.o ../objects/index.o ../objects/instdox.o ../objects/language.o ../objects/latexdocvisitor.o ../objects/latexgen.o ../objects/layout.o ../objects/logos.o ../objects/mandocvisitor.o ../objects/mangen.o ../objects/marshal.o ../objects/memberdef.o ../objects/membergroup.o ../objects/memberlist.o ../objects/membername.o ../objects/message.o ../objects/msc.o ../objects/namespacedef.o ../objects/objcache.o ../objects/outputgen.o ../objects/outputlist.o ../objects/pagedef.o ../objects/perlmodgen.o ../objects/pngenc.o ../objects/pre.o ../objects/pycode.o ../objects/pyscanner.o ../objects/qhp.o ../objects/qhpxmlwriter.o ../objects/reflist.o ../objects/rtfdocvisitor.o ../objects/rtfgen.o ../objects/rtfstyle.o ../objects/scanner.o ../objects/searchindex.o ../objects/store.o ../objects/tagreader.o ../objects/textdocvisitor.o ../objects/translator.o ../objects/util.o ../objects/version.o ../objects/vhdlcode.o ../objects/vhdldocgen.o ../objects/vhdlscanner.o ../objects/xmldocvisitor.o ../objects/xmlgen.o ranlib ../lib/libdoxygen.a gmake[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' /opt/local/bin/gmake -f Makefile.doxygen PERL=/opt/local/bin/perl all gmake[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' /usr/bin/g++-4.0 -I/opt/local/include -c -pipe -D__FreeBSD__=6 -Wall -W -O2 -I../qtools -I../libpng -I../libmd5 -I. -o ../objects/main.o main.cpp /usr/bin/g++-4.0 -L/opt/local/lib -Wl,-search_paths_first -o ../bin/doxygen ../objects/main.o -L../lib -ldoxygen -ldoxycfg -lqtools -lpng -lmd5 -liconv Undefined symbols: "_MD5SigToString", referenced from: MemberDef::setAnchor(char const*)in libdoxygen.a(memberdef.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) Definition::_docsAlreadyAdded(QString const&) in libdoxygen.a(definition.o) DirDef::getOutputFileBase() const in libdoxygen.a(dirdef.o) computeMd5Signature(DotNode*, DotNode::GraphType, GraphOutputFormat, bool, bool, bool, QCString&)in libdoxygen.a(dot.o) DotGfxHierarchyTable::writeGraph(QTextStream&, char const*) constin libdoxygen.a(dot.o) "_MD5Buffer", referenced from: MemberDef::setAnchor(char const*)in libdoxygen.a(memberdef.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) Definition::_docsAlreadyAdded(QString const&) in libdoxygen.a(definition.o) DirDef::getOutputFileBase() const in libdoxygen.a(dirdef.o) computeMd5Signature(DotNode*, DotNode::GraphType, GraphOutputFormat, bool, bool, bool, QCString&)in libdoxygen.a(dot.o) DotGfxHierarchyTable::writeGraph(QTextStream&, char const*) constin libdoxygen.a(dot.o) ld: symbol(s) not found collect2: ld returned 1 exit status gmake[2]: *** [../bin/doxygen] Error 1 gmake[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' gmake[1]: *** [all] Error 2 gmake[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' make: *** [all] Error 2 Error: Status 1 encountered during processing. }}} -- Ticket URL: <http://trac.macports.org/ticket/18748> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: new doxygen port fails to link --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Changes (by css@…): * status: new => assigned Comment: Which platform and MacOS X version are you using? Is your entire port tree up to date? -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: new doxygen port fails to link --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Comment(by brett@…): 10.5.6/intel, all ports current. The problem seems limited to the MD5 bits. -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: new doxygen port fails to link --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Comment(by css@…): Hrm ... it builds and links fine for me on 10.5.6/Intel with all ports current. Could you please: {{{ port clean doxygen port build -v doxygen > doxygen_build.txt }}} Please attach that file to the ticket. I'm curious if something else is getting picked up from your environment that makes doxygen build differently on your system. Maybe there was an earlier build error within libmd5? -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:4> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: new doxygen port fails to link --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Comment(by brett@…): I tested on another 10.5.6/intel box (with no other ports installed) and had no issues; from the error above, I'd guess it's picking up libmd5 from libwww's md5 library as opposed to the one embedded within doxygen which has a different API, and that a link reordering should fix things. -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:5> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: new doxygen port fails to link --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Comment(by brett@…): And confirmed: deactivating libwww lets doxygen install cleanly. -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:6> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: new doxygen port fails to link --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Comment(by css@…): Thanks for the confirmation ... I'm not sure where the best place would be to note the incompatibility. Maybe a preconfigure hook could check whether libwww is installed, and it could present the user with a message that it should be deactivated before building and installing doxygen. -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:7> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: doxygen build phase conflicts with libwww --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Port Bugs Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Description changed by css@…: Old description:
{{{ udo port install doxygen ---> Fetching doxygen ---> Attempting to fetch doxygen-1.5.8.src.tar.gz from http://distfiles.macports.org/doxygen ---> Verifying checksum(s) for doxygen ---> Extracting doxygen ---> Configuring doxygen ---> Building doxygen Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8" && make all " returned error 2 Command output: ar cq ../lib/libdoxygen.a ../objects/ce_lex.o ../objects/ce_parse.o ../objects/classdef.o ../objects/classlist.o ../objects/cmdmapper.o ../objects/code.o ../objects/commentcnv.o ../objects/commentscan.o ../objects/cppvalue.o ../objects/debug.o ../objects/defgen.o ../objects/declinfo.o ../objects/defargs.o ../objects/define.o ../objects/definition.o ../objects/diagram.o ../objects/dirdef.o ../objects/docparser.o ../objects/docsets.o ../objects/doctokenizer.o ../objects/dot.o ../objects/doxygen.o ../objects/entry.o ../objects/filedef.o ../objects/filename.o ../objects/formula.o ../objects/ftvhelp.o ../objects/fortrancode.o ../objects/fortranscanner.o ../objects/groupdef.o ../objects/htags.o ../objects/htmldocvisitor.o ../objects/htmlgen.o ../objects/htmlhelp.o ../objects/indexlog.o ../objects/image.o ../objects/index.o ../objects/instdox.o ../objects/language.o ../objects/latexdocvisitor.o ../objects/latexgen.o ../objects/layout.o ../objects/logos.o ../objects/mandocvisitor.o ../objects/mangen.o ../objects/marshal.o ../objects/memberdef.o ../objects/membergroup.o ../objects/memberlist.o ../objects/membername.o ../objects/message.o ../objects/msc.o ../objects/namespacedef.o ../objects/objcache.o ../objects/outputgen.o ../objects/outputlist.o ../objects/pagedef.o ../objects/perlmodgen.o ../objects/pngenc.o ../objects/pre.o ../objects/pycode.o ../objects/pyscanner.o ../objects/qhp.o ../objects/qhpxmlwriter.o ../objects/reflist.o ../objects/rtfdocvisitor.o ../objects/rtfgen.o ../objects/rtfstyle.o ../objects/scanner.o ../objects/searchindex.o ../objects/store.o ../objects/tagreader.o ../objects/textdocvisitor.o ../objects/translator.o ../objects/util.o ../objects/version.o ../objects/vhdlcode.o ../objects/vhdldocgen.o ../objects/vhdlscanner.o ../objects/xmldocvisitor.o ../objects/xmlgen.o ranlib ../lib/libdoxygen.a gmake[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' /opt/local/bin/gmake -f Makefile.doxygen PERL=/opt/local/bin/perl all gmake[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' /usr/bin/g++-4.0 -I/opt/local/include -c -pipe -D__FreeBSD__=6 -Wall -W -O2 -I../qtools -I../libpng -I../libmd5 -I. -o ../objects/main.o main.cpp /usr/bin/g++-4.0 -L/opt/local/lib -Wl,-search_paths_first -o ../bin/doxygen ../objects/main.o -L../lib -ldoxygen -ldoxycfg -lqtools -lpng -lmd5 -liconv Undefined symbols: "_MD5SigToString", referenced from: MemberDef::setAnchor(char const*)in libdoxygen.a(memberdef.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) Definition::_docsAlreadyAdded(QString const&) in libdoxygen.a(definition.o) DirDef::getOutputFileBase() const in libdoxygen.a(dirdef.o) computeMd5Signature(DotNode*, DotNode::GraphType, GraphOutputFormat, bool, bool, bool, QCString&)in libdoxygen.a(dot.o) DotGfxHierarchyTable::writeGraph(QTextStream&, char const*) constin libdoxygen.a(dot.o) "_MD5Buffer", referenced from: MemberDef::setAnchor(char const*)in libdoxygen.a(memberdef.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) Definition::_docsAlreadyAdded(QString const&) in libdoxygen.a(definition.o) DirDef::getOutputFileBase() const in libdoxygen.a(dirdef.o) computeMd5Signature(DotNode*, DotNode::GraphType, GraphOutputFormat, bool, bool, bool, QCString&)in libdoxygen.a(dot.o) DotGfxHierarchyTable::writeGraph(QTextStream&, char const*) constin libdoxygen.a(dot.o) ld: symbol(s) not found collect2: ld returned 1 exit status gmake[2]: *** [../bin/doxygen] Error 1 gmake[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' gmake[1]: *** [all] Error 2 gmake[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' make: *** [all] Error 2
Error: Status 1 encountered during processing. }}}
New description: {{{ udo port install doxygen ---> Fetching doxygen ---> Attempting to fetch doxygen-1.5.8.src.tar.gz from http://distfiles.macports.org/doxygen ---> Verifying checksum(s) for doxygen ---> Extracting doxygen ---> Configuring doxygen ---> Building doxygen Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8" && make all " returned error 2 Command output: ar cq ../lib/libdoxygen.a ../objects/ce_lex.o ../objects/ce_parse.o ../objects/classdef.o ../objects/classlist.o ../objects/cmdmapper.o ../objects/code.o ../objects/commentcnv.o ../objects/commentscan.o ../objects/cppvalue.o ../objects/debug.o ../objects/defgen.o ../objects/declinfo.o ../objects/defargs.o ../objects/define.o ../objects/definition.o ../objects/diagram.o ../objects/dirdef.o ../objects/docparser.o ../objects/docsets.o ../objects/doctokenizer.o ../objects/dot.o ../objects/doxygen.o ../objects/entry.o ../objects/filedef.o ../objects/filename.o ../objects/formula.o ../objects/ftvhelp.o ../objects/fortrancode.o ../objects/fortranscanner.o ../objects/groupdef.o ../objects/htags.o ../objects/htmldocvisitor.o ../objects/htmlgen.o ../objects/htmlhelp.o ../objects/indexlog.o ../objects/image.o ../objects/index.o ../objects/instdox.o ../objects/language.o ../objects/latexdocvisitor.o ../objects/latexgen.o ../objects/layout.o ../objects/logos.o ../objects/mandocvisitor.o ../objects/mangen.o ../objects/marshal.o ../objects/memberdef.o ../objects/membergroup.o ../objects/memberlist.o ../objects/membername.o ../objects/message.o ../objects/msc.o ../objects/namespacedef.o ../objects/objcache.o ../objects/outputgen.o ../objects/outputlist.o ../objects/pagedef.o ../objects/perlmodgen.o ../objects/pngenc.o ../objects/pre.o ../objects/pycode.o ../objects/pyscanner.o ../objects/qhp.o ../objects/qhpxmlwriter.o ../objects/reflist.o ../objects/rtfdocvisitor.o ../objects/rtfgen.o ../objects/rtfstyle.o ../objects/scanner.o ../objects/searchindex.o ../objects/store.o ../objects/tagreader.o ../objects/textdocvisitor.o ../objects/translator.o ../objects/util.o ../objects/version.o ../objects/vhdlcode.o ../objects/vhdldocgen.o ../objects/vhdlscanner.o ../objects/xmldocvisitor.o ../objects/xmlgen.o ranlib ../lib/libdoxygen.a gmake[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' /opt/local/bin/gmake -f Makefile.doxygen PERL=/opt/local/bin/perl all gmake[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' /usr/bin/g++-4.0 -I/opt/local/include -c -pipe -D__FreeBSD__=6 -Wall -W -O2 -I../qtools -I../libpng -I../libmd5 -I. -o ../objects/main.o main.cpp /usr/bin/g++-4.0 -L/opt/local/lib -Wl,-search_paths_first -o ../bin/doxygen ../objects/main.o -L../lib -ldoxygen -ldoxycfg -lqtools -lpng -lmd5 -liconv Undefined symbols: "_MD5SigToString", referenced from: MemberDef::setAnchor(char const*)in libdoxygen.a(memberdef.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) Definition::_docsAlreadyAdded(QString const&) in libdoxygen.a(definition.o) DirDef::getOutputFileBase() const in libdoxygen.a(dirdef.o) computeMd5Signature(DotNode*, DotNode::GraphType, GraphOutputFormat, bool, bool, bool, QCString&)in libdoxygen.a(dot.o) DotGfxHierarchyTable::writeGraph(QTextStream&, char const*) constin libdoxygen.a(dot.o) "_MD5Buffer", referenced from: MemberDef::setAnchor(char const*)in libdoxygen.a(memberdef.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) convertNameToFile(char const*, bool)in libdoxygen.a(util.o) Definition::_docsAlreadyAdded(QString const&) in libdoxygen.a(definition.o) DirDef::getOutputFileBase() const in libdoxygen.a(dirdef.o) computeMd5Signature(DotNode*, DotNode::GraphType, GraphOutputFormat, bool, bool, bool, QCString&)in libdoxygen.a(dot.o) DotGfxHierarchyTable::writeGraph(QTextStream&, char const*) constin libdoxygen.a(dot.o) ld: symbol(s) not found collect2: ld returned 1 exit status gmake[2]: *** [../bin/doxygen] Error 1 gmake[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' gmake[1]: *** [all] Error 2 gmake[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_textproc_doxygen/work/doxygen-1.5.8/src' make: *** [all] Error 2 Error: Status 1 encountered during processing. }}} The above error results from the presence of libwww. A pre-build hook should present an error indicating the user should deactivate the libwww port prior to building and installing doxygen. It's fine to activate libwww after building and installing the doxygen port. -- -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:8> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: doxygen build phase conflicts with libwww --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Comment(by ryandesign@…): The easiest way to handle this for now would be to add the line {{{ conflicts libwww }}} to the doxygen port. -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:10> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: doxygen build phase conflicts with libwww --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Comment(by css@…): Replying to [comment:10 ryandesign@…]:
{{{ conflicts libwww }}}
That seems like it would be prohibitive, as it would prevent having the two ports coexist at all, right? Is there an easy way from a Portfile to check that a particular port is already installed? (Or would I need to check whether a file from libwww exists in the prefix?) -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:11> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: doxygen build phase conflicts with libwww --------------------------------+------------------------------------------- Reporter: brett@… | Owner: css@… Type: defect | Status: assigned Priority: Normal | Milestone: Component: ports | Version: 1.7.0 Keywords: | Port: doxygen --------------------------------+------------------------------------------- Comment(by takeshi@…): A patch at #22426 will solve the problem without deactivating libwww or making libwww and doxygen conflicting ports. -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:12> MacPorts <http://www.macports.org/> Ports system for Mac OS
#18748: doxygen build phase conflicts with libwww ---------------------------------+------------------------------------------ Reporter: brett@… | Owner: css@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 1.7.0 Resolution: fixed | Keywords: Port: doxygen | ---------------------------------+------------------------------------------ Changes (by css@…): * status: assigned => closed * resolution: => fixed Comment: Replying to [comment:12 takeshi@…]:
A patch at #22426 will solve the problem without deactivating libwww or making libwww and doxygen conflicting ports.
Applied to r62746, which also updates to 1.6.2! -- Ticket URL: <http://trac.macports.org/ticket/18748#comment:13> MacPorts <http://www.macports.org/> Ports system for Mac OS
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