[MacPorts] #17419: NEW PORT PyMOL-1.1
#17419: NEW PORT PyMOL-1.1 ----------------------------------+----------------------------------------- Reporter: andrew@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Port Submissions Component: ports | Version: 1.6.0 Keywords: science pymol x11 | Port: pymol ----------------------------------+----------------------------------------- Here is a port for an X11 build of PyMOL. The fany installer is because of the brain-dead linux-assuming install script from the autohell tools. -- Ticket URL: <http://trac.macports.org/ticket/17419> MacPorts <http://www.macports.org/> Ports system for Mac OS
#17419: NEW PORT PyMOL-1.1 ----------------------------------+----------------------------------------- Reporter: andrew@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Port Submissions Component: ports | Version: 1.7.0 Keywords: | Port: pymol ----------------------------------+----------------------------------------- Changes (by snc@…): * keywords: science pymol x11 => * version: 1.6.0 => 1.7.0 Comment: The portfile failed to fetch. Please update svn.url in the portfile. {{{ svn: PROPFIND request failed on '/svnroot/pymol/branches/b11/pymol' svn: PROPFIND of '/svnroot/pymol/branches/b11/pymol': Server certificate verification failed: issuer is not trusted (https://pymol.svn.sourceforge.net) Warning: the following items did not execute (for pymol): org.macports.activate org.macports.fetch org.macports.extract org.macports.checksum org.macports.patch org.macports.configure org.macports.build org.macports.destroot org.macports.archive org.macports.install Error: Target org.macports.fetch returned: Subversion check out failed Error: Status 1 encountered during processing. }}} -- Ticket URL: <http://trac.macports.org/ticket/17419#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS
#17419: NEW PORT PyMOL-1.1 ----------------------------------+----------------------------------------- Reporter: andrew@… | Owner: macports-tickets@… Type: enhancement | Status: new Priority: Normal | Milestone: Port Submissions Component: ports | Version: 1.7.0 Keywords: | Port: pymol ----------------------------------+----------------------------------------- Comment(by andrew@…): The `svn.url` as per the portfile is '''correct'''. The port fails to fetch because of something going wrong between SVN's certificate repository and/or sourceforge's SSL certificate. Note that the current svn.url is `https://pymol.svn.sourceforge.net/svnroot/pymol/branches/b11/pymol`. You can change the url to attempt to match the certificate better by adding the HTTPS port as `https://pymol.svn.sourceforge.net:443/svnroot/pymol/branches/b11/pymol`, but get identical results (see below). My interpretation is that subversion is '''incorrectly''' failing to parse sourceforge's wildcard SSL certificate. Summary - I believe that this behaviour is a bug in MacPorts/SVN. (In fact, the sourceforge certificate was issued on 12 Nov 2008, so I'm guessing that the Root CA is not in SVN's trusted CA database. {{{ dyn129-100-144-235:pymol andrew$ mkdir tmp dyn129-100-144-235:pymol andrew$ cd tmp dyn129-100-144-235:tmp andrew$ svn co https://pymol.svn.sourceforge.net:443/svnroot/pymol/branches/b11/pymol Error validating server certificate for 'https://pymol.svn.sourceforge.net:443': - The certificate is not issued by a trusted authority. Use the fingerprint to validate the certificate manually! Certificate information: - Hostname: *.svn.sourceforge.net - Valid: from Wed, 12 Nov 2008 01:25:27 GMT until Tue, 12 Jan 2010 01:25:27 GMT - Issuer: Equifax Secure Certificate Authority, Equifax, US - Fingerprint: 04:b2:70:e9:ba:cf:70:fc:e8:8a:22:86:14:13:51:97:1b:6a:de:38 (R)eject, accept (t)emporarily or accept (p)ermanently? t A pymol/configure A pymol/Makefile.in A pymol/ov A pymol/ov/src A pymol/ov/src/Makefile.delsci A pymol/ov/src/OVContext.h A pymol/ov/src/OVOneToOne.h A pymol/ov/src/Makefile.in A pymol/ov/src/OVOneToAny.c A pymol/ov/src/OVLexicon.c A pymol/ov/src/OVOneToAny.h A pymol/ov/src/ov_utility.c A pymol/ov/src/OVLexicon.h A pymol/ov/src/ov_utility.h A pymol/ov/src/OVreturns.h [... remainder deleted ...] }}} -- Ticket URL: <http://trac.macports.org/ticket/17419#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS
#17419: NEW PORT PyMOL-1.1 ----------------------------------+----------------------------------------- Reporter: andrew@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.7.0 Keywords: | Port: pymol ----------------------------------+----------------------------------------- Comment(by ryandesign@…): It looks like this ticket will be obsoleted by #21376 which is a request for pymol 1.2r1. -- Ticket URL: <http://trac.macports.org/ticket/17419#comment:6> MacPorts <http://www.macports.org/> Ports system for Mac OS
#17419: NEW PORT PyMOL-1.1 ----------------------------------+----------------------------------------- Reporter: andrew@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.7.0 Keywords: | Port: pymol ----------------------------------+----------------------------------------- Comment(by adfernandes@…): Ha! Funny - I've spent part of the afternoon getting 1.2r2 (released October 05) running. My port is attached. The thing builds... BUT... It needs either (a) pwm and tkinter OR (b) wxpython. My 1.1 port built and ran fine with tkinter. However, this 1.2r2 portfile works fine until we get a crash in python 2.6.3's tkinter. (I have updated all versions on my local ports; the crash seems unavoidable). So... I decided to build wxPython... and the latest 2.8.10.1 won't build on the mac because they've left in all sorts of win/gtk-specific functions on the swig wrappers. Yuck. I'm building an old version of wxPython now, hoping it works. -- Ticket URL: <http://trac.macports.org/ticket/17419#comment:7> MacPorts <http://www.macports.org/> Ports system for Mac OS
#17419: NEW PORT PyMOL-1.1 ----------------------------------+----------------------------------------- Reporter: andrew@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.7.0 Keywords: | Port: pymol ----------------------------------+----------------------------------------- Comment(by adfernandes@…): Huh. Just looked at the submitter's Portfile from #21376... I think it might be better than mine. Also, looks like #21968 is the tkinter problem I was having. Thanks for the head's up! -- Ticket URL: <http://trac.macports.org/ticket/17419#comment:8> MacPorts <http://www.macports.org/> Ports system for Mac OS
#17419: NEW PORT PyMOL-1.1 -----------------------------------+---------------------------------------- Reporter: andrew@… | Owner: macports-tickets@… Type: submission | Status: closed Priority: Normal | Milestone: Component: ports | Version: 1.7.0 Resolution: duplicate | Keywords: Port: pymol | -----------------------------------+---------------------------------------- Changes (by adfernandes@…): * status: new => closed * resolution: => duplicate -- Ticket URL: <http://trac.macports.org/ticket/17419#comment:9> MacPorts <http://www.macports.org/> Ports system for Mac OS
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