#51139: py-pyne hdf5 byg ----------------------+-------------------------------- Reporter: ith140@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: py-pyne ----------------------+-------------------------------- Although the port builds correctly for py27 and py34, the hdf5 database that is suppose to accompany this fails. The results of nuc_data_make-2.7 --fetch-prebuilt False are shown below: ---- {{{ Making nuc_data at /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pyne/nuc_data.h5 Copying AME 2012 atomic mass data. Making atomic mass data table. Traceback (most recent call last): File "/opt/local/bin/nuc_data_make-2.7", line 6, in <module> main() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pyne/dbgen/nuc_data_make.py", line 155, in main make_map[mo](args) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pyne/dbgen/atomic_mass.py", line 155, in make_atomic_mass make_atomic_mass_table(nuc_data, build_dir) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pyne/dbgen/atomic_mass.py", line 123, in make_atomic_mass_table kdb = tb.openFile(nuc_data, 'a', filters=BASIC_FILTERS) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/tables/_past.py", line 35, in oldfunc return obj(*args, **kwargs) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/tables/file.py", line 318, in open_file return File(filename, mode, title, root_uep, filters, **kwargs) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/tables/file.py", line 819, in __init__ root._g_post_init_hook() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/tables/group.py", line 259, in _g_post_init_hook set_attr('FILTERS', newfilters) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/tables/attributeset.py", line 403, in _g__setattr self._g_setattr(self._v_node, name, stvalue) File "tables/hdf5extension.pyx", line 696, in tables.hdf5extension.AttributeSet._g_setattr (tables/hdf5extension.c:7549) tables.exceptions.HDF5ExtError: HDF5 error back trace File "H5A.c", line 634, in H5Awrite not an attribute End of HDF5 error back trace Can't set attribute 'FILTERS' in node: / (RootGroup) ''. Closing remaining open files:/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/pyne/nuc_data.h5...done }}} -- Ticket URL: <https://trac.macports.org/ticket/51139> MacPorts <https://www.macports.org/> Ports system for OS X