#23430: py26-scipy fails to build ---------------------------------------+------------------------------------ Reporter: laurent.farvacque@… | Owner: ram@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: py26-scipy ---------------------------------------+------------------------------------ Changes (by jmr@…): * owner: macports-tickets@… => ram@… * cc: jmr@… (added) * port: => py26-scipy Comment: Please remember to fill in the Port field and cc the maintainers. -- Ticket URL: <http://trac.macports.org/ticket/23430#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS

#23430: py26-scipy fails to build ---------------------------------------+------------------------------------ Reporter: laurent.farvacque@… | Owner: ram@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: py26-scipy ---------------------------------------+------------------------------------ Comment(by matteo.soccorsi@…): PPC G4 Mac OS 10.4.11 {{{ gfortran-mp-4.3:f77: scipy/lib/lapack/calc_lwork.f /opt/local/bin/gfortran-mp-4.3 -Wall -Wall -undefined dynamic_lookup -bundle build/temp.macosx-10.4-ppc-2.6/build/src.macosx-10.4-ppc-2.6/scipy/lib/lapack/calc_lworkmodule.o build/temp.macosx-10.4-ppc-2.6/build/src.macosx-10.4-ppc-2.6/fortranobject.o build/temp.macosx-10.4-ppc-2.6/scipy/lib/lapack/calc_lwork.o -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/powerpc-apple- darwin8.11.0/4.3.4 -Lbuild/temp.macosx-10.4-ppc-2.6 -llapack -lf77blas -lcblas -latlas -lgfortran -o build/lib.macosx-10.4-ppc-2.6/scipy/lib/lapack/calc_lwork.so /usr/bin/ld: Undefined symbols: ___powisf2 referenced from liblapack expected to be defined in libgcc ___powidf2 referenced from liblapack expected to be defined in libgcc collect2: ld returned 1 exit status /usr/bin/ld: Undefined symbols: ___powisf2 referenced from liblapack expected to be defined in libgcc ___powidf2 referenced from liblapack expected to be defined in libgcc collect2: ld returned 1 exit status error: Command "/opt/local/bin/gfortran-mp-4.3 -Wall -Wall -undefined dynamic_lookup -bundle build/temp.macosx-10.4-ppc-2.6/build/src.macosx-10.4-ppc-2.6/scipy/lib/lapack/calc_lworkmodule.o build/temp.macosx-10.4-ppc-2.6/build/src.macosx-10.4-ppc-2.6/fortranobject.o build/temp.macosx-10.4-ppc-2.6/scipy/lib/lapack/calc_lwork.o -L/opt/local/lib -L/opt/local/lib/gcc43/gcc/powerpc-apple- darwin8.11.0/4.3.4 -Lbuild/temp.macosx-10.4-ppc-2.6 -llapack -lf77blas -lcblas -latlas -lgfortran -o build/lib.macosx-10.4-ppc-2.6/scipy/lib/lapack/calc_lwork.so" failed with exit status 1 Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-scipy/work/scipy-0.7.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/local/bin/gfortran-mp-4.3 --f90exec /opt/local/bin/gfortran-mp-4.3 config --cc /opt/local/bin/gcc-mp-4.3 --include-dirs /opt/local/include --library-dirs /opt/local/lib build " returned error 1 DEBUG: Backtrace: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-scipy/work/scipy-0.7.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/local/bin/gfortran-mp-4.3 --f90exec /opt/local/bin/gfortran-mp-4.3 config --cc /opt/local/bin/gcc-mp-4.3 --include-dirs /opt/local/include --library-dirs /opt/local/lib build " returned error 1 while executing "command_exec build" (procedure "portbuild::build_main" line 9) invoked from within "$procedure $targetname" Warning: the following items did not execute (for py26-scipy): org.macports.activate org.macports.build org.macports.destroot org.macports.install Error: Status 1 encountered during processing. }}} -- Ticket URL: <http://trac.macports.org/ticket/23430#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS

#23430: py26-scipy fails to build ---------------------------------------+------------------------------------ Reporter: laurent.farvacque@… | Owner: ram@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: py26-scipy ---------------------------------------+------------------------------------ Comment(by andre.david@…): Whatever was touched, tickled (and broke) my gear: {{{ $ sudo port upgrade py26-scipy ---> Computing dependencies for py26-scipy ---> Building py26-scipy Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-scipy/work/scipy-0.7.2" && /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/local/bin/gfortran-mp-4.3 --f90exec /opt/local/bin/gfortran-mp-4.3 config --cc /opt/local/bin/gcc-mp-4.3 --include-dirs /opt/local/include --library-dirs /opt/local/lib build " returned error 1 Command output: adding 'build/src.macosx-10.6-intel-2.6/fortranobject.c' to sources. adding 'build/src.macosx-10.6-intel-2.6' to include_dirs. building extension "scipy.stats.mvn" sources f2py options: [] adding 'build/src.macosx-10.6-intel-2.6/fortranobject.c' to sources. adding 'build/src.macosx-10.6-intel-2.6' to include_dirs. adding 'build/src.macosx-10.6-intel-2.6/scipy/stats/mvn-f2pywrappers.f' to sources. building extension "scipy.ndimage._nd_image" sources building data_files sources build_src: building npy-pkg config files running build_py copying scipy/version.py -> build/lib.macosx-10.6-intel-2.6/scipy copying build/src.macosx-10.6-intel-2.6/scipy/__config__.py -> build/lib.macosx-10.6-intel-2.6/scipy running build_clib customize UnixCCompiler customize UnixCCompiler using build_clib customize Gnu95FCompiler Found executable /opt/local/bin/gfortran-mp-4.3 customize Gnu95FCompiler using build_clib building 'rootfind' library compiling C sources C compiler: /opt/local/bin/gcc-mp-4.3 -arch x86_64 -arch i386 -isysroot / -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/numpy/core/include -c' gcc-mp-4.3: scipy/optimize/Zeros/brentq.c cc1: error: unrecognized command line option "-arch" cc1: error: unrecognized command line option "-arch" cc1: error: unrecognized command line option "-arch" cc1: error: unrecognized command line option "-arch" error: Command "/opt/local/bin/gcc-mp-4.3 -arch x86_64 -arch i386 -isysroot / -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/numpy/core/include -c scipy/optimize/Zeros/brentq.c -o build/temp.macosx-10.6-intel-2.6/scipy/optimize/Zeros/brentq.o" failed with exit status 1 Error: Unable to upgrade port: 1 Before reporting a bug, first run the command again with the -d flag to get complete output. }}} -- Ticket URL: <http://trac.macports.org/ticket/23430#comment:5> MacPorts <http://www.macports.org/> Ports system for Mac OS

#23430: py26-scipy fails to build ---------------------------------------+------------------------------------ Reporter: laurent.farvacque@… | Owner: ram@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: py26-scipy ---------------------------------------+------------------------------------ Comment(by danmichaelo+macports@…): I can confirm this. py26-scipy fails with the same error messages with python26 +universal (x86_64, i386), but builds fine with "non-universal" python26. -- Ticket URL: <http://trac.macports.org/ticket/23430#comment:7> MacPorts <http://www.macports.org/> Ports system for Mac OS

#23430: py26-scipy fails to build ---------------------------------------+------------------------------------ Reporter: laurent.farvacque@… | Owner: ram@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: py26-scipy ---------------------------------------+------------------------------------ Comment(by vince@…): I have a fix for universal (2-way intel x86_64/i386) build of atlas, py26_numpy and py26_scipy. Interested? -- Ticket URL: <http://trac.macports.org/ticket/23430#comment:9> MacPorts <http://www.macports.org/> Ports system for Mac OS

#23430: py26-scipy fails to build ---------------------------------------+------------------------------------ Reporter: laurent.farvacque@… | Owner: ram@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: py26-scipy ---------------------------------------+------------------------------------ Comment(by tamyrvoll@…): When I try to install py26-scipy with +no_atlas I get: {{{ Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-scipy/work/scipy-0.7.2" && /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/local/bin/gfortran-mp-4.3 --f90exec /opt/local/bin/gfortran-mp-4.3 config --cc /opt/local/bin/gcc-mp-4.3 --include-dirs /opt/local/include --library-dirs /opt/local/lib build " returned error 1 Command output: scipy/optimize/minpack/lmdif.f: In function 'lmdif': scipy/optimize/minpack/lmdif.f:193: warning: 'xnorm' may be used uninitialized in this function scipy/optimize/minpack/lmdif.f:193: warning: 'temp' may be used uninitialized in this function gfortran-mp-4.3:f77: scipy/optimize/minpack/lmdif1.f gfortran-mp-4.3:f77: scipy/optimize/minpack/lmpar.f gfortran-mp-4.3:f77: scipy/optimize/minpack/lmstr.f scipy/optimize/minpack/lmstr.f: In function 'lmstr': scipy/optimize/minpack/lmstr.f:189: warning: 'xnorm' may be used uninitialized in this function gfortran-mp-4.3:f77: scipy/optimize/minpack/lmstr1.f gfortran-mp-4.3:f77: scipy/optimize/minpack/qform.f gfortran-mp-4.3:f77: scipy/optimize/minpack/qrfac.f gfortran-mp-4.3:f77: scipy/optimize/minpack/qrsolv.f gfortran-mp-4.3:f77: scipy/optimize/minpack/r1mpyq.f scipy/optimize/minpack/r1mpyq.f: In function 'r1mpyq': scipy/optimize/minpack/r1mpyq.f:54: warning: 'sin' may be used uninitialized in this function scipy/optimize/minpack/r1mpyq.f:54: warning: 'cos' may be used uninitialized in this function gfortran-mp-4.3:f77: scipy/optimize/minpack/r1updt.f gfortran-mp-4.3:f77: scipy/optimize/minpack/rwupdt.f ar: adding 23 object files to build/temp.macosx-10.6-x86_64-2.6/libminpack.a ranlib:@ build/temp.macosx-10.6-x86_64-2.6/libminpack.a building 'rootfind' library compiling C sources C compiler: /opt/local/bin/gcc-mp-4.3 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch x86_64 creating build/temp.macosx-10.6-x86_64-2.6/scipy/optimize/Zeros compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/numpy/core/include -c' gcc-mp-4.3: scipy/optimize/Zeros/brenth.c cc1: error: unrecognized command line option "-arch" cc1: error: unrecognized command line option "-arch" error: Command "/opt/local/bin/gcc-mp-4.3 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch x86_64 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/numpy/core/include -c scipy/optimize/Zeros/brenth.c -o build/temp.macosx-10.6-x86_64-2.6/scipy/optimize/Zeros/brenth.o" failed with exit status 1 Error: Status 1 encountered during processing. Before reporting a bug, first run the command again with the -d flag to get complete output. }}} My installed python is 2.6.5_1+darwin+no_tkinter My system is Intel OS X 10.6.3 with XCode 3.2.2, running kernel in 64-bit mode -- Ticket URL: <http://trac.macports.org/ticket/23430#comment:11> MacPorts <http://www.macports.org/> Ports system for Mac OS

#23430: py26-scipy fails to build ---------------------------------------+------------------------------------ Reporter: laurent.farvacque@… | Owner: ram@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: py26-scipy ---------------------------------------+------------------------------------ Comment(by jmr@…): I put in some code to take advantage of the changes from #24802 in r67841. See if it works now. -- Ticket URL: <http://trac.macports.org/ticket/23430#comment:13> MacPorts <http://www.macports.org/> Ports system for Mac OS

#23430: py26-scipy fails to build ----------------------------------------+----------------------------------- Reporter: laurent.farvacque@… | Owner: ram@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Resolution: fixed | Keywords: Port: py26-scipy | ----------------------------------------+----------------------------------- Changes (by jmr@…): * status: new => closed * resolution: => fixed Comment: Assuming that the lack of assertions to the contrary means this is fixed. -- Ticket URL: <http://trac.macports.org/ticket/23430#comment:15> MacPorts <http://www.macports.org/> Ports system for Mac OS