[MacPorts] #26468: New Port: p5-bioperl
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.1 Keywords: haspatch | Port: p5-bioperl ----------------------------+----------------------------------------------- BioPerl is a collection of Perl Modules for Bioinformatics. HomePage:: http://www.bioperl.org/wiki/Main_Page CPAN Page:: http://search.cpan.org/~cjfields/BioPerl-1.6.1/BioPerl.pm Requested in ticket #24022. -- Ticket URL: <http://trac.macports.org/ticket/26468> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Changes (by macsforever2000@…): * keywords: haspatch => * version: 1.9.1 => -- Ticket URL: <http://trac.macports.org/ticket/26468#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Changes (by macsforever2000@…): * cc: uzilday@… (added) -- Ticket URL: <http://trac.macports.org/ticket/26468#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: ryandesign@… Type: submission | Status: assigned Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Changes (by ryandesign@…): * owner: macports-tickets@… => ryandesign@… * status: new => assigned -- Ticket URL: <https://trac.macports.org/ticket/26468#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: ryandesign@… Type: submission | Status: assigned Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Comment(by ryandesign@…): Attached is a revised portfile with these changes: * reformatted * added "universal_variant no" because dependency p5-libwww-perl does not have a universal variant * added dependency on p5-io-string because I noticed it was downloading IO::String * added dependency on p5-data-stag because I noticed it was downloading Data::Stag Unfortunately we have no port p5-data-stag yet so please create and submit a port p5-data-stag. Please add any other required dependencies also. -- Ticket URL: <https://trac.macports.org/ticket/26468#comment:4> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: ryandesign@… Type: submission | Status: assigned Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Comment(by tonym@…): Replying to [comment:4 ryandesign@…]:
Unfortunately we have no port p5-data-stag yet so please create and submit a port p5-data-stag. Please add any other required dependencies also. Will do.
-- Ticket URL: <https://trac.macports.org/ticket/26468#comment:5> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: ryandesign@… Type: submission | Status: assigned Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Comment(by tonym@…):
Replying to [comment:4 ryandesign@…]:
Unfortunately we have no port p5-data-stag yet so please create and submit a port p5-data-stag. Please add any other required dependencies also. p5-data-stag has been submitted in ticket #26529
-- Ticket URL: <https://trac.macports.org/ticket/26468#comment:6> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: ryandesign@… Type: submission | Status: assigned Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Comment(by larry+macports@…): It looks to me like the only showstopper for this issue has been resolved. -- Ticket URL: <https://trac.macports.org/ticket/26468#comment:7> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: ryandesign@… Type: submission | Status: assigned Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Comment(by andreas.wilm@…): Works fine for me MacPorts 1.9.2 perl5 @5.8.9 lang/perl5 expat @2.0.1 textproc/expat p5-data-stag @0.11 perl/p5-data-stag p5-io-string @1.08 perl/p5-io-string p5-module-build @0.3607 perl/p5-module-build p5-libwww-perl @5.837 perl/p5-libwww-perl OS X 10.6.6 Andreas -- Ticket URL: <https://trac.macports.org/ticket/26468#comment:8> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: ryandesign@… Type: submission | Status: assigned Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Comment(by ryandesign@…): Sorry for forgetting about this submission. I remember now what the next problem was. When installing, it tries to download DB::File. It says "DB_File is absolutely required prior to installation: shall I install it now using a CPAN shell?" We don't have a p5-db-file port yet. -- Ticket URL: <https://trac.macports.org/ticket/26468#comment:10> MacPorts <http://www.macports.org/> Ports system for Mac OS
#26468: New Port: p5-bioperl ----------------------------+----------------------------------------------- Reporter: tonym@… | Owner: ryandesign@… Type: submission | Status: assigned Priority: Normal | Milestone: Component: ports | Version: Keywords: | Port: p5-bioperl ----------------------------+----------------------------------------------- Comment(by ryandesign@…): Replying to [comment:10 ryandesign@…]:
We don't have a p5-db-file port yet.
I filed #28174 for this and will write some notes there about what I know about this. -- Ticket URL: <https://trac.macports.org/ticket/26468#comment:11> MacPorts <http://www.macports.org/> Ports system for Mac OS
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