[MacPorts] #50723: py27-scipy and py26-scipy fail during "upgrade outdated" with "must set at least one Fortran variant"
#50723: py27-scipy and py26-scipy fail during "upgrade outdated" with "must set at least one Fortran variant" -------------------------+-------------------------------- Reporter: ebrignole@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: -------------------------+-------------------------------- Here's the screen dump and log file is attached {{{ ed$ sudo port clean py27-scipy Password: ---> Cleaning py27-scipy ed$ sudo port upgrade outdated ---> Computing dependencies for py27-scipy ---> Fetching archive for py27-scipy ---> Attempting to fetch py27-scipy-0.17.0_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/py27-scipy ---> Attempting to fetch py27-scipy-0.17.0_0.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/py27-scipy ---> Attempting to fetch py27-scipy-0.17.0_0.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/py27-scipy ---> Fetching distfiles for py27-scipy Error: org.macports.fetch for port py27-scipy returned: must set at least one Fortran variant Please see the log file for port py27-scipy for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-scipy/py27-scipy/main.log Error: Unable to upgrade port: 1 To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets }}} -- Ticket URL: <https://trac.macports.org/ticket/50723> MacPorts <https://www.macports.org/> Ports system for OS X
#50723: py27-scipy and py26-scipy fail during "upgrade outdated" with "must set at least one Fortran variant" --------------------------+-------------------- Reporter: ebrignole@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: py-scipy | --------------------------+-------------------- Changes (by ryandesign@…): * owner: macports-tickets@… => sean@… * cc: michaelld@… (added) * port: => py-scipy Comment: The message is correct. At least one Fortran variant must be selected. `port variants py27-scipy` will give you a list of available variants. Please first run `sudo port selfupdate` and see if that resolves the issue. There was a problem where users who had previously selected the now-deleted gcc48 variant were not automatically upgraded to the gfortran variant. That was fixed last month in r145149. -- Ticket URL: <https://trac.macports.org/ticket/50723#comment:1> MacPorts <https://www.macports.org/> Ports system for OS X
#50723: py27-scipy and py26-scipy fail during "upgrade outdated" with "must set at least one Fortran variant" --------------------------+-------------------- Reporter: ebrignole@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: py-scipy | --------------------------+-------------------- Comment (by ebrignole@…): I have found a solution to the issue that upgrades both py26-scipy and py27-scipy {{{ 1) sudo port uninstall py26-scipy 2) sudo port uninstall inactive 3) sudo port uninstall leaves (repeat until no leaves remain) 4) sudo port uninstall py27-scipy 5) sudo port uninstall inactive 6) sudo port uninstall leaves (repeat until no leaves remain) 7) sudo port install py26-scipy (success!) 8) sudo port install py27-scipy (fails) 9) sudo port clean py27-scipy 10) sudo port uninstall inactive 11) sudo port uninstall leaves (repeat until no leaves remain) 12) sudo port install py27-scipy (success!!) }}} Does the fact that I must "uninstall leaves" after "install py26-scipy" to achieve a successful "install py27-scipy" indicate a conflict between dependencies for py26-scipy and py27-scipy? As far as I know I've been just using the default variants for years. Below is the screen dump starting from step 2 above so you can see what programs might be the source of the conflict had to be uninstalled. {{{ ed$ sudo port uninstall inactive ---> Uninstalling eigen3 @3.2.7_1 ---> Cleaning eigen3 ---> Uninstalling gnuplot @5.0.2_0+aquaterm+luaterm+pangocairo+wxwidgets+x11 ---> Cleaning gnuplot ---> Uninstalling graphite2 @1.2.4_0 ---> Cleaning graphite2 ---> Uninstalling ImageMagick @6.9.2-10_1+x11 ---> Cleaning ImageMagick ---> Uninstalling libcaca @0.99.beta19_4+x11 ---> Cleaning libcaca ---> Uninstalling python27 @2.7.11_0+universal ---> Cleaning python27 ---> Uninstalling readline @6.3.003_1 ---> Cleaning readline ---> Uninstalling tiff @4.0.6_0+universal ---> Cleaning tiff ed$ sudo port uninstall leaves ---> Deactivating autoconf @2.69_5 ---> Cleaning autoconf ---> Uninstalling autoconf @2.69_5 ---> Cleaning autoconf ---> Deactivating automake @1.15_1 ---> Cleaning automake ---> Uninstalling automake @1.15_1 ---> Cleaning automake ---> Deactivating cmake @3.4.3_0 ---> Cleaning cmake ---> Uninstalling cmake @3.4.3_0 ---> Cleaning cmake ---> Deactivating py26-numpy @1.10.4_0+gfortran ---> Cleaning py26-numpy ---> Uninstalling py26-numpy @1.10.4_0+gfortran ---> Cleaning py26-numpy ed$ sudo port uninstall leaves ---> Deactivating curl @7.47.1_0+ssl ---> Cleaning curl ---> Uninstalling curl @7.47.1_0+ssl ---> Cleaning curl ---> Deactivating libarchive @3.1.2_1 ---> Cleaning libarchive ---> Uninstalling libarchive @3.1.2_1 ---> Cleaning libarchive ---> Deactivating py26-cython @0.23.4_0 ---> Cleaning py26-cython ---> Uninstalling py26-cython @0.23.4_0 ---> Cleaning py26-cython ---> Deactivating py26-nose @1.3.7_0 ---> Cleaning py26-nose ---> Uninstalling py26-nose @1.3.7_0 ---> Cleaning py26-nose ed$ sudo port uninstall leaves ---> Deactivating curl-ca-bundle @7.47.1_0 ---> Cleaning curl-ca-bundle ---> Uninstalling curl-ca-bundle @7.47.1_0 ---> Cleaning curl-ca-bundle ---> Deactivating lzo2 @2.09_0 ---> Cleaning lzo2 ---> Uninstalling lzo2 @2.09_0 ---> Cleaning lzo2 ---> Deactivating py26-setuptools @19.2_0 ---> Cleaning py26-setuptools ---> Uninstalling py26-setuptools @19.2_0 ---> Cleaning py26-setuptools ed$ sudo port uninstall leaves Error: No ports matched the given expression ed$ sudo port uninstall py27-scipy ---> Deactivating py27-scipy @0.16.1_0+gcc47 ---> Cleaning py27-scipy ---> Uninstalling py27-scipy @0.16.1_0+gcc47 ---> Cleaning py27-scipy ed$ sudo port uninstall inactive Error: No ports matched the given expression ed$ sudo port uninstall leaves ---> Deactivating swig-python @3.0.8_0 ---> Cleaning swig-python ---> Uninstalling swig-python @3.0.8_0 ---> Cleaning swig-python ed$ sudo port uninstall leaves ---> Deactivating swig @3.0.8_0 ---> Cleaning swig ---> Uninstalling swig @3.0.8_0 ---> Cleaning swig ed$ sudo port uninstall leaves Error: No ports matched the given expression ed$ sudo port selfupdate Password: ---> Updating MacPorts base sources using rsync MacPorts base version 2.3.4 installed, MacPorts base version 2.3.4 downloaded. ---> Updating the ports tree ---> MacPorts base is already the latest version The ports tree has been updated. To upgrade your installed ports, you should run port upgrade outdated ed$ sudo port upgrade outdated Nothing to upgrade. ed$ sudo port install py26-scipy ---> Computing dependencies for py26-scipy ---> Dependencies to be installed: gcc5 py26-nose py26-setuptools py26-numpy py26-cython swig-python bison bison-runtime m4 gsed swig ---> Fetching archive for gcc5 ---> Attempting to fetch gcc5-5.3.0_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/gcc5 ---> Attempting to fetch gcc5-5.3.0_0.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/gcc5 ---> Attempting to fetch gcc5-5.3.0_0.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/gcc5 ---> Fetching distfiles for gcc5 ---> Verifying checksums for gcc5 ---> Extracting gcc5 ---> Applying patches to gcc5 ---> Configuring gcc5 ---> Building gcc5 ---> Staging gcc5 into destroot ---> Installing gcc5 @5.3.0_0 ---> Activating gcc5 @5.3.0_0 ---> Cleaning gcc5 ---> Fetching archive for py26-setuptools ---> Attempting to fetch py26-setuptools-19.2_0.darwin_11.noarch.tbz2 from http://packages.macports.org/py26-setuptools ---> Attempting to fetch py26-setuptools-19.2_0.darwin_11.noarch.tbz2 from http://sea.us.packages.macports.org/macports/packages/py26-setuptools ---> Attempting to fetch py26-setuptools-19.2_0.darwin_11.noarch.tbz2 from http://lil.fr.packages.macports.org/py26-setuptools ---> Fetching distfiles for py26-setuptools ---> Verifying checksums for py26-setuptools ---> Extracting py26-setuptools ---> Configuring py26-setuptools ---> Building py26-setuptools ---> Staging py26-setuptools into destroot ---> Installing py26-setuptools @19.2_0 ---> Activating py26-setuptools @19.2_0 ---> Cleaning py26-setuptools ---> Fetching archive for py26-nose ---> Attempting to fetch py26-nose-1.3.7_0.darwin_11.noarch.tbz2 from http://packages.macports.org/py26-nose ---> Attempting to fetch py26-nose-1.3.7_0.darwin_11.noarch.tbz2 from http://sea.us.packages.macports.org/macports/packages/py26-nose ---> Attempting to fetch py26-nose-1.3.7_0.darwin_11.noarch.tbz2 from http://lil.fr.packages.macports.org/py26-nose ---> Fetching distfiles for py26-nose ---> Verifying checksums for py26-nose ---> Extracting py26-nose ---> Configuring py26-nose ---> Building py26-nose ---> Staging py26-nose into destroot ---> Installing py26-nose @1.3.7_0 ---> Activating py26-nose @1.3.7_0 ---> Cleaning py26-nose ---> Fetching archive for py26-cython ---> Attempting to fetch py26-cython-0.23.4_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/py26-cython ---> Attempting to fetch py26-cython-0.23.4_0.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/py26-cython ---> Attempting to fetch py26-cython-0.23.4_0.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/py26-cython ---> Fetching distfiles for py26-cython ---> Verifying checksums for py26-cython ---> Extracting py26-cython ---> Configuring py26-cython ---> Building py26-cython ---> Staging py26-cython into destroot ---> Installing py26-cython @0.23.4_0 ---> Activating py26-cython @0.23.4_0 To make the Python 2.6 version of Cython the one that is run when you execute the commands without a version suffix, e.g. 'cython', run: port select --set cython cython26 ---> Cleaning py26-cython ---> Fetching archive for py26-numpy ---> Attempting to fetch py26-numpy-1.10.4_0+gfortran.darwin_11.x86_64.tbz2 from http://packages.macports.org/py26-numpy ---> Attempting to fetch py26-numpy-1.10.4_0+gfortran.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/py26-numpy ---> Attempting to fetch py26-numpy-1.10.4_0+gfortran.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/py26-numpy ---> Fetching distfiles for py26-numpy ---> Verifying checksums for py26-numpy ---> Extracting py26-numpy ---> Applying patches to py26-numpy ---> Configuring py26-numpy ---> Building py26-numpy ---> Staging py26-numpy into destroot ---> Installing py26-numpy @1.10.4_0+gfortran ---> Activating py26-numpy @1.10.4_0+gfortran ---> Cleaning py26-numpy ---> Fetching archive for bison-runtime ---> Attempting to fetch bison-runtime-3.0.4_0.darwin_11.noarch.tbz2 from http://packages.macports.org/bison-runtime ---> Attempting to fetch bison- runtime-3.0.4_0.darwin_11.noarch.tbz2.rmd160 from http://packages.macports.org/bison-runtime ---> Installing bison-runtime @3.0.4_0 ---> Activating bison-runtime @3.0.4_0 ---> Cleaning bison-runtime ---> Fetching archive for m4 ---> Attempting to fetch m4-1.4.17_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/m4 ---> Attempting to fetch m4-1.4.17_0.darwin_11.x86_64.tbz2.rmd160 from http://packages.macports.org/m4 ---> Installing m4 @1.4.17_0 ---> Activating m4 @1.4.17_0 ---> Cleaning m4 ---> Fetching archive for bison ---> Attempting to fetch bison-3.0.4_1.darwin_11.x86_64.tbz2 from http://packages.macports.org/bison ---> Attempting to fetch bison-3.0.4_1.darwin_11.x86_64.tbz2.rmd160 from http://packages.macports.org/bison ---> Installing bison @3.0.4_1 ---> Activating bison @3.0.4_1 ---> Cleaning bison ---> Fetching archive for gsed ---> Attempting to fetch gsed-4.2.2_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/gsed ---> Attempting to fetch gsed-4.2.2_0.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/gsed ---> Attempting to fetch gsed-4.2.2_0.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/gsed ---> Fetching distfiles for gsed ---> Verifying checksums for gsed ---> Extracting gsed ---> Configuring gsed ---> Building gsed ---> Staging gsed into destroot ---> Installing gsed @4.2.2_0 ---> Activating gsed @4.2.2_0 ---> Cleaning gsed ---> Fetching archive for swig ---> Attempting to fetch swig-3.0.8_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/swig ---> Attempting to fetch swig-3.0.8_0.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/swig ---> Attempting to fetch swig-3.0.8_0.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/swig ---> Fetching distfiles for swig ---> Verifying checksums for swig ---> Extracting swig ---> Configuring swig ---> Building swig ---> Staging swig into destroot ---> Installing swig @3.0.8_0 ---> Activating swig @3.0.8_0 ---> Cleaning swig ---> Fetching archive for swig-python ---> Attempting to fetch swig-python-3.0.8_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/swig-python ---> Attempting to fetch swig-python-3.0.8_0.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/swig-python ---> Attempting to fetch swig-python-3.0.8_0.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/swig-python ---> Fetching distfiles for swig-python ---> Verifying checksums for swig-python ---> Extracting swig-python ---> Configuring swig-python ---> Building swig-python ---> Staging swig-python into destroot ---> Installing swig-python @3.0.8_0 ---> Activating swig-python @3.0.8_0 ---> Cleaning swig-python ---> Fetching archive for py26-scipy ---> Attempting to fetch py26-scipy-0.17.0_0+gfortran.darwin_11.x86_64.tbz2 from http://packages.macports.org/py26-scipy ---> Attempting to fetch py26-scipy-0.17.0_0+gfortran.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/py26-scipy ---> Attempting to fetch py26-scipy-0.17.0_0+gfortran.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/py26-scipy ---> Fetching distfiles for py26-scipy ---> Attempting to fetch scipy-0.17.0.tar.gz from http://distfiles.macports.org/py-scipy ---> Verifying checksums for py26-scipy ---> Extracting py26-scipy ---> Configuring py26-scipy ---> Building py26-scipy ---> Staging py26-scipy into destroot ---> Installing py26-scipy @0.17.0_0+gfortran ---> Activating py26-scipy @0.17.0_0+gfortran ---> Cleaning py26-scipy ---> Updating database of binaries ---> Scanning binaries for linking errors ---> No broken files found. ed$ sudo port install py27-scipy Password: Error: Requested variants "+gfortran" do not match those the build was started with: "". Error: Please use the same variants again, or run 'port clean py27-scipy' first to remove the existing partially completed build. To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port py27-scipy failed ed$ sudo port clean py27-scipy ---> Cleaning py27-scipy ed$ sudo port uninstall inactive Error: No ports matched the given expression ed$ sudo port uninstall leaves ---> Deactivating bison @3.0.4_1 ---> Cleaning bison ---> Uninstalling bison @3.0.4_1 ---> Cleaning bison ---> Deactivating gcc5 @5.3.0_0 ---> Cleaning gcc5 ---> Uninstalling gcc5 @5.3.0_0 ---> Cleaning gcc5 ---> Deactivating gsed @4.2.2_0 ---> Cleaning gsed ---> Uninstalling gsed @4.2.2_0 ---> Cleaning gsed ed$ sudo port uninstall leaves ---> Deactivating bison-runtime @3.0.4_0 ---> Cleaning bison-runtime ---> Uninstalling bison-runtime @3.0.4_0 ---> Cleaning bison-runtime ---> Deactivating m4 @1.4.17_0 ---> Cleaning m4 ---> Uninstalling m4 @1.4.17_0 ---> Cleaning m4 ed$ sudo port uninstall leaves Error: No ports matched the given expression ed$ sudo port install py27-scipy ---> Computing dependencies for py27-scipy ---> Dependencies to be installed: gcc5 ---> Fetching archive for gcc5 ---> Attempting to fetch gcc5-5.3.0_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/gcc5 ---> Attempting to fetch gcc5-5.3.0_0.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/gcc5 ---> Attempting to fetch gcc5-5.3.0_0.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/gcc5 ---> Fetching distfiles for gcc5 ---> Verifying checksums for gcc5 ---> Extracting gcc5 ---> Applying patches to gcc5 ---> Configuring gcc5 ---> Building gcc5 ---> Staging gcc5 into destroot ---> Installing gcc5 @5.3.0_0 ---> Activating gcc5 @5.3.0_0 ---> Cleaning gcc5 ---> Fetching archive for py27-scipy ---> Attempting to fetch py27-scipy-0.17.0_0+gfortran.darwin_11.x86_64.tbz2 from http://packages.macports.org/py27-scipy ---> Attempting to fetch py27-scipy-0.17.0_0+gfortran.darwin_11.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/py27-scipy ---> Attempting to fetch py27-scipy-0.17.0_0+gfortran.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/py27-scipy ---> Fetching distfiles for py27-scipy ---> Verifying checksums for py27-scipy ---> Extracting py27-scipy ---> Configuring py27-scipy ---> Building py27-scipy ---> Staging py27-scipy into destroot ---> Installing py27-scipy @0.17.0_0+gfortran ---> Activating py27-scipy @0.17.0_0+gfortran ---> Cleaning py27-scipy ---> Updating database of binaries ---> Scanning binaries for linking errors ---> No broken files found. }}} -- Ticket URL: <https://trac.macports.org/ticket/50723#comment:2> MacPorts <https://www.macports.org/> Ports system for OS X
#50723: py27-scipy and py26-scipy fail during "upgrade outdated" with "must set at least one Fortran variant" --------------------------+-------------------- Reporter: ebrignole@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: py-scipy | --------------------------+-------------------- Comment (by Eric.J.Fielding@…): I was getting the same error. I found that was because my py27-scipy was installed with the +gcc47 variant that no longer exists. {{{ fielding% sudo port variants py27-scipy py27-scipy has the variants: atlas: Use MacPorts ATLAS libraries * conflicts with openblas clang37: Build using the MacPorts clang 3.7 compiler * conflicts with gcc49 gcc5 gcc6 llvm gcc48: Legacy compatibility variant * requires gfortran gcc49: Build using the MacPorts gcc 4.9 compiler * conflicts with clang37 gcc5 gcc6 gfortran llvm gcc5: Build using the MacPorts gcc 5 compiler * conflicts with clang37 gcc49 gcc6 gfortran llvm gcc6: Build using the MacPorts gcc 6 compiler * conflicts with clang37 gcc49 gcc5 gfortran llvm [+]gfortran: Build using the MacPorts gcc 5 Fortran compiler * conflicts with gcc49 gcc5 gcc6 llvm: Build using the Apple native llvm-gcc 4.2 compiler * conflicts with clang37 gcc49 gcc5 gcc6 openblas: Use MacPorts OpenBLAS Libraries * conflicts with atlas fielding% sudo port installed py27-scipy The following ports are currently installed: py27-scipy @0.15.1_0+gcc47 py27-scipy @0.16.0_0+gcc47 py27-scipy @0.16.0_1+gcc47 py27-scipy @0.16.1_0+gcc47 (active) }}} I just had to run a port clean and then install with a current variant. {{{ fielding% sudo port clean py27-scipy ---> Cleaning py27-scipy fielding% sudo port install py27-scipy +gcc49 }}} -- Ticket URL: <https://trac.macports.org/ticket/50723#comment:3> MacPorts <https://www.macports.org/> Ports system for OS X
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