[MacPorts] #49426: Cannot install py27-h5py +openmpi +gcc5
#49426: Cannot install py27-h5py +openmpi +gcc5 -------------------------+-------------------------------- Reporter: schnetter@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: -------------------------+-------------------------------- I am using openmpi-gcc5, and want to install a compatible py27-h5py. I am configuring with {{{ sudo port install py27-h5py +openmpi +gcc5 }}} -- without the +gcc5 option, this installs openmpi-default which I don't want. The above command fails: {{{ $ sudo port install py27-h5py +openmpi +gcc5 ---> Computing dependencies for py27-h5py ---> Fetching archive for py27-h5py ---> Attempting to fetch py27-h5py-2.5.0_1+gcc5+openmpi.darwin_15.x86_64.tbz2 from http://packages.macports.org/py27-h5py ---> Attempting to fetch py27-h5py-2.5.0_1+gcc5+openmpi.darwin_15.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/py27-h5py ---> Attempting to fetch py27-h5py-2.5.0_1+gcc5+openmpi.darwin_15.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/py27-h5py ---> Fetching distfiles for py27-h5py ---> Verifying checksums for py27-h5py ---> Extracting py27-h5py ---> Configuring py27-h5py ---> Building py27-h5py Error: org.macports.build for port py27-h5py returned: command execution failed Please see the log file for port py27-h5py for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports .org_release_tarballs_ports_python_py-h5py/py27-h5py/main.log To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port py27-h5py failed }}} I am using OS X El Capitan, Darwin 15.0.0. I attach the full log. -- Ticket URL: <https://trac.macports.org/ticket/49426> MacPorts <https://www.macports.org/> Ports system for OS X
#49426: py27-h5py +openmpi +gcc5: build fails --------------------------+------------------------ Reporter: schnetter@… | Owner: eborisch@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: py27-h5py | --------------------------+------------------------ Changes (by ryandesign@…): * owner: macports-tickets@… => eborisch@… * port: => py27-h5py -- Ticket URL: <https://trac.macports.org/ticket/49426#comment:2> MacPorts <https://www.macports.org/> Ports system for OS X
#49426: py27-h5py +openmpi +gcc5: build fails --------------------------+------------------------ Reporter: schnetter@… | Owner: eborisch@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: py27-h5py | --------------------------+------------------------ Comment (by eborisch@…): This appears to be an interaction between h5py and mpi4py 2.0 (recently updated.) If I revert to mpi4py 1.3.1, this builds; with 2.0, it fails as advertised. I haven't had a chance to dig further, but you could bring it up either on h5py's github issues tracker to see if you can get any traction there. -- Ticket URL: <https://trac.macports.org/ticket/49426#comment:3> MacPorts <https://www.macports.org/> Ports system for OS X
#49426: py27-h5py +openmpi +gcc5: build fails --------------------------+------------------------ Reporter: schnetter@… | Owner: eborisch@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: py27-h5py | --------------------------+------------------------ Comment (by ufdup89@…): Replying to [comment:3 eborisch@…]:
This appears to be an interaction between h5py and mpi4py 2.0 (recently updated.) If I revert to mpi4py 1.3.1, this builds; with 2.0, it fails as advertised. I haven't had a chance to dig further, but you could bring it up either on h5py's github issues tracker to see if you can get any traction there.
i guess they've worked this out already… see https://github.com/SeismicData/pyasdf/issues/11 there are some changes to be done in the source code. i am new to macports and don't really know how to apply the changes into source code (distfiles) that macports uses… -- Ticket URL: <https://trac.macports.org/ticket/49426#comment:4> MacPorts <https://www.macports.org/> Ports system for OS X
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