[MacPorts] #49796: Error: Failed to install cctools when installing py-biopython
#49796: Error: Failed to install cctools when installing py-biopython -------------------------+-------------------------------- Reporter: paula.srs@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: cctools -------------------------+-------------------------------- ---> Computing dependencies for py-biopython ---> Dependencies to be installed: py27-biopython py27-numpy gcc5 cctools gcc_select gmp isl ld64 ld64-latest dyld-headers libmacho-headers libgcc libmpc mpfr py27-cython cython_select py27-nose nosetests_select ---> Building cctools Error: org.macports.build for port cctools returned: command execution failed Error: Failed to install cctools Please see the log file for port cctools for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_cctools/cctools/main.log Error: The following dependencies were not installed: py27-biopython py27-numpy gcc5 cctools gcc_select gmp isl ld64 ld64-latest dyld-headers libmacho-headers libgcc libmpc mpfr py27-cython cython_select py27-nose nosetests_select To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port py-biopython failed -- Ticket URL: <https://trac.macports.org/ticket/49796> MacPorts <https://www.macports.org/> Ports system for OS X
#49796: Error: Failed to install cctools when installing py-biopython --------------------------+-------------------------------- Reporter: paula.srs@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: cctools | --------------------------+-------------------------------- Comment (by mouginot.baptiste@…): update your macport... hopefully it should be ok :) sudo prot selfupdate :) -- Ticket URL: <https://trac.macports.org/ticket/49796#comment:1> MacPorts <https://www.macports.org/> Ports system for OS X
#49796: Error: Failed to install cctools when installing py-biopython --------------------------+-------------------------------- Reporter: paula.srs@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: cctools | --------------------------+-------------------------------- Comment (by johan.kytt@…): Updating the ports tree has no effect. The error is in /opt/local/include/libunwind.h It tries to include {{{<__libunwind_config.h>}}}, which doesn't exist. The actual location of the config file relative to the header is {{{"libunwind/config.h"}}}. So changing the line {{{ #include <__libunwind_config.h> }}} to {{{ #include "libunwind/config.h" }}} solves the problem. Someone should update the port accordingly. -- Ticket URL: <https://trac.macports.org/ticket/49796#comment:2> MacPorts <https://www.macports.org/> Ports system for OS X
#49796: Error: Failed to install cctools when installing py-biopython --------------------------+------------------------ Reporter: paula.srs@… | Owner: jeremyhu@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: | Keywords: Port: cctools | --------------------------+------------------------ Changes (by ryandesign@…): * owner: macports-tickets@… => jeremyhu@… Old description:
---> Computing dependencies for py-biopython ---> Dependencies to be installed: py27-biopython py27-numpy gcc5 cctools gcc_select gmp isl ld64 ld64-latest dyld-headers libmacho-headers libgcc libmpc mpfr py27-cython cython_select py27-nose nosetests_select ---> Building cctools Error: org.macports.build for port cctools returned: command execution failed Error: Failed to install cctools Please see the log file for port cctools for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_cctools/cctools/main.log Error: The following dependencies were not installed: py27-biopython py27-numpy gcc5 cctools gcc_select gmp isl ld64 ld64-latest dyld-headers libmacho-headers libgcc libmpc mpfr py27-cython cython_select py27-nose nosetests_select To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port py-biopython failed
New description: {{{ ---> Computing dependencies for py-biopython ---> Dependencies to be installed: py27-biopython py27-numpy gcc5 cctools gcc_select gmp isl ld64 ld64-latest dyld-headers libmacho-headers libgcc libmpc mpfr py27-cython cython_select py27-nose nosetests_select ---> Building cctools Error: org.macports.build for port cctools returned: command execution failed Error: Failed to install cctools Please see the log file for port cctools for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_cctools/cctools/main.log Error: The following dependencies were not installed: py27-biopython py27-numpy gcc5 cctools gcc_select gmp isl ld64 ld64-latest dyld-headers libmacho-headers libgcc libmpc mpfr py27-cython cython_select py27-nose nosetests_select To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets Error: Processing of port py-biopython failed }}} -- Comment: Sounds like a duplicate of #49781, except that you said updating the ports tree has no effect. -- Ticket URL: <https://trac.macports.org/ticket/49796#comment:3> MacPorts <https://www.macports.org/> Ports system for OS X
#49796: Error: Failed to install cctools when installing py-biopython --------------------------+------------------------ Reporter: paula.srs@… | Owner: jeremyhu@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: duplicate | Keywords: Port: cctools | --------------------------+------------------------ Changes (by jeremyhu@…): * status: new => closed * resolution: => duplicate Comment: Likely mirror timing or something. Please update and try again. -- Ticket URL: <https://trac.macports.org/ticket/49796#comment:4> MacPorts <https://www.macports.org/> Ports system for OS X
#49796: Error: Failed to install cctools when installing py-biopython --------------------------+------------------------ Reporter: paula.srs@… | Owner: jeremyhu@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Resolution: duplicate | Keywords: Port: cctools | --------------------------+------------------------ Comment (by paula.srs@…): Replying to [comment:1 mouginot.baptiste@…]:
update your macport... hopefully it should be ok :)
sudo prot selfupdate :)
I managed to install py-biopython after doing
sudo port selfupdate
-- Ticket URL: <https://trac.macports.org/ticket/49796#comment:5> MacPorts <https://www.macports.org/> Ports system for OS X
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