[MacPorts] #40824: py-scipy: build error
#40824: py-scipy: build error -------------------------------+---------------------- Reporter: macsforever2000@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Keywords: | Port: py-scipy -------------------------------+---------------------- I'm attempting to update to py27-scipy 0.13.0 but I see the following error: {{{ :info:destroot running build_py :info:destroot copying scipy/version.py -> build/lib.macosx-10.8-x86_64-2.7/scipy :info:destroot copying build/src.macosx-10.8-x86_64-2.7/scipy/__config__.py -> build/lib.macosx-10.8-x86_64-2.7/scipy :info:destroot running build_clib :info:destroot customize UnixCCompiler :info:destroot customize UnixCCompiler using build_clib :info:destroot running build_ext :info:destroot customize UnixCCompiler :info:destroot customize UnixCCompiler using build_ext :info:destroot resetting extension 'scipy.integrate._odepack' language from 'c' to 'f77'. :info:destroot resetting extension 'scipy.integrate.vode' language from 'c' to 'f77'. :info:destroot resetting extension 'scipy.integrate.lsoda' language from 'c' to 'f77'. :info:destroot resetting extension 'scipy.odr.__odrpack' language from 'c' to 'f77'. :info:destroot extending extension 'scipy.sparse.linalg.dsolve._superlu' defined_macros with [('USE_VENDOR_BLAS', 1)] :info:destroot customize UnixCCompiler :info:destroot #### ['/usr/bin/clang', '-fno-strict-aliasing', '-fno- common', '-dynamic', '-pipe', '-Os', '-fwrapv', '-DNDEBUG', '-g', '-fwrapv', '-O3', '-Wall', '-Wstrict-prototypes'] ####### :info:destroot Missing compiler_cxx fix for UnixCCompiler :info:destroot customize UnixCCompiler using build_ext :info:destroot warning: build_ext: f77_compiler=gnu95 is not available. :info:destroot :info:destroot building 'scipy.linalg._interpolative' extension :info:destroot error: extension 'scipy.linalg._interpolative' has Fortran sources but no Fortran compiler found }}} I'm on OS X 10.8.5 with Xcode 5. Here are my variants chosen: {{{ f$ port installed py27-scipy The following ports are currently installed: py27-scipy @0.12.1_0+atlas+gcc48 (active) }}} I'm Cc'ing stromnov who updated it to this version in r112372. -- Ticket URL: <https://trac.macports.org/ticket/40824> MacPorts <http://www.macports.org/> Ports system for OS X
#40824: py-scipy: build error --------------------------------+-------------------- Reporter: macsforever2000@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Resolution: | Keywords: Port: py-scipy atlas | --------------------------------+-------------------- Changes (by macsforever2000@…): * cc: vince@… (added) * port: py-scipy => py-scipy atlas Comment: As an update, this is related to atlas because removing that variant allows it to build: {{{ $ port installed py27-scipy atlas The following ports are currently installed: atlas @3.10.1_5+gcc48 (active) py27-scipy @0.12.1_0+atlas+gcc48 py27-scipy @0.13.0_0+gcc48 (active) }}} Cc'ing the maintainer of atlas for possible comment. -- Ticket URL: <https://trac.macports.org/ticket/40824#comment:1> MacPorts <http://www.macports.org/> Ports system for OS X
#40824: py-scipy: build error --------------------------------+-------------------- Reporter: macsforever2000@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Resolution: | Keywords: Port: py-scipy atlas | --------------------------------+-------------------- Comment (by vince@…): It has been a long since I have not rebuilt scipy. I’ll try this weekend and see how it turns out. -- Ticket URL: <https://trac.macports.org/ticket/40824#comment:3> MacPorts <http://www.macports.org/> Ports system for OS X
#40824: py-scipy: build error --------------------------------+-------------------- Reporter: macsforever2000@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Resolution: | Keywords: Port: py-scipy atlas | --------------------------------+-------------------- Comment (by stromnov@…): It looks like problem with numpy's distutils - compiler successfully detected at build phase, but not at install phase. -- Ticket URL: <https://trac.macports.org/ticket/40824#comment:5> MacPorts <http://www.macports.org/> Ports system for OS X
#40824: py-scipy: build error --------------------------------+-------------------- Reporter: macsforever2000@… | Owner: sean@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Resolution: | Keywords: Port: py-scipy atlas | --------------------------------+-------------------- Comment (by stromnov@…): Fixed at r112767 and works for me on OS X 10.8.5 with and without +atlas variant (atlas compiled with +perf variant and numpy compiled with +atlas). -- Ticket URL: <https://trac.macports.org/ticket/40824#comment:7> MacPorts <http://www.macports.org/> Ports system for OS X
#40824: py-scipy: build error --------------------------------+-------------------- Reporter: macsforever2000@… | Owner: sean@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.2.0 Resolution: fixed | Keywords: Port: py-scipy atlas | --------------------------------+-------------------- Changes (by macsforever2000@…): * status: new => closed * resolution: => fixed Comment: Confirmed that your fix for py-numpy fixed this problem. Thanks! -- Ticket URL: <https://trac.macports.org/ticket/40824#comment:8> MacPorts <http://www.macports.org/> Ports system for OS X
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