[MacPorts] #38966: octave install @2.1.3 +qrupdate install error - build failure"
#38966: octave install @2.1.3 +qrupdate install error - build failure" ---------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: ---------------------------+-------------------------------- Hi In trying to install octave using: sudo port install octave-devel +atlas+docs I am running into the problem in the log. I am on Mountain Lion and Xcode 4.6.2. -- Ticket URL: <https://trac.macports.org/ticket/38966> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Changes (by macsforever2000@…): * port: => qrupdate Comment: In the future, please fill in the Port field of the failed port. Error is: {{{ :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2/src' :info:build gfortran-mp-4.7 -m64 -fimplicit-none -O3 -funroll-loops -dynamiclib -o ../libqrupdate.dylib -install_name /opt/local/lib/libqrupdate.1.dylib caxcpy.o cch1dn.o cch1up.o cchdex.o cchinx.o cchshx.o cgqvec.o cqhqr.o cqr1up.o cqrdec.o cqrder.o cqrinc.o cqrinr.o cqrot.o cqrqh.o cqrshc.o cqrtv1.o dch1dn.o dch1up.o dchdex.o dchinx.o dchshx.o dgqvec.o dqhqr.o dqr1up.o dqrdec.o dqrder.o dqrinc.o dqrinr.o dqrot.o dqrqh.o dqrshc.o dqrtv1.o sch1dn.o sch1up.o schdex.o schinx.o schshx.o sgqvec.o sqhqr.o sqr1up.o sqrdec.o sqrder.o sqrinc.o sqrinr.o sqrot.o sqrqh.o sqrshc.o sqrtv1.o zaxcpy.o zch1dn.o zch1up.o zchdex.o zchinx.o zchshx.o zgqvec.o zqhqr.o zqr1up.o zqrdec.o zqrder.o zqrinc.o zqrinr.o zqrot.o zqrqh.o zqrshc.o zqrtv1.o clu1up.o dlu1up.o slu1up.o zlu1up.o clup1up.o dlup1up.o slup1up.o zlup1up.o \ :info:build -L/opt/local/lib -ltatlas -L/opt/local/lib -llapack :info:build Undefined symbols for architecture x86_64: :info:build "_caxpy_", referenced from: :info:build _cgqvec_ in cgqvec.o :info:build _cqr1up_ in cqr1up.o :info:build _cqrinc_ in cqrinc.o :info:build _clup1up_ in clup1up.o :info:build "_ccopy_", referenced from: :info:build _cchdex_ in cchdex.o :info:build _cchinx_ in cchinx.o :info:build _cchshx_ in cchshx.o :info:build _cqrdec_ in cqrdec.o :info:build _cqrder_ in cqrder.o :info:build _cqrinc_ in cqrinc.o :info:build _cqrinr_ in cqrinr.o :info:build ... :info:build "_cdotc_", referenced from: :info:build _cqr1up_ in cqr1up.o :info:build _cqrinc_ in cqrinc.o :info:build "_cdotu_", referenced from: :info:build _cgqvec_ in cgqvec.o :info:build "_cgemv_", referenced from: :info:build _clup1up_ in clup1up.o :info:build "_cgeru_", referenced from: :info:build _clup1up_ in clup1up.o :info:build "_clartg_", referenced from: :info:build _cch1dn_ in cch1dn.o :info:build _cch1up_ in cch1up.o :info:build _cqhqr_ in cqhqr.o :info:build _cqrtv1_ in cqrtv1.o :info:build "_crot_", referenced from: :info:build _cqr1up_ in cqr1up.o :info:build _cqrot_ in cqrot.o :info:build "_csscal_", referenced from: :info:build _cgqvec_ in cgqvec.o :info:build _cqr1up_ in cqr1up.o :info:build _cqrinc_ in cqrinc.o :info:build "_cswap_", referenced from: :info:build _clup1up_ in clup1up.o :info:build "_ctrsv_", referenced from: :info:build _cch1dn_ in cch1dn.o :info:build _cchinx_ in cchinx.o :info:build _clup1up_ in clup1up.o :info:build "_daxpy_", referenced from: :info:build _dgqvec_ in dgqvec.o :info:build _dqr1up_ in dqr1up.o :info:build _dqrinc_ in dqrinc.o :info:build _dlup1up_ in dlup1up.o :info:build "_dcopy_", referenced from: :info:build _dchdex_ in dchdex.o :info:build _dchinx_ in dchinx.o :info:build _dchshx_ in dchshx.o :info:build _dqrdec_ in dqrdec.o :info:build _dqrder_ in dqrder.o :info:build _dqrinc_ in dqrinc.o :info:build _dqrinr_ in dqrinr.o :info:build ... :info:build "_ddot_", referenced from: :info:build _dgqvec_ in dgqvec.o :info:build _dqr1up_ in dqr1up.o :info:build _dqrinc_ in dqrinc.o :info:build "_dgemv_", referenced from: :info:build _dlup1up_ in dlup1up.o :info:build "_dger_", referenced from: :info:build _dlup1up_ in dlup1up.o :info:build "_dlamch_", referenced from: :info:build _dqr1up_ in dqr1up.o :info:build _zqr1up_ in zqr1up.o :info:build "_dlartg_", referenced from: :info:build _dch1dn_ in dch1dn.o :info:build _dch1up_ in dch1up.o :info:build _dqhqr_ in dqhqr.o :info:build _dqrtv1_ in dqrtv1.o :info:build "_dnrm2_", referenced from: :info:build _dch1dn_ in dch1dn.o :info:build _dchinx_ in dchinx.o :info:build _dgqvec_ in dgqvec.o :info:build _dqr1up_ in dqr1up.o :info:build _dqrinc_ in dqrinc.o :info:build "_drot_", referenced from: :info:build _dqr1up_ in dqr1up.o :info:build _dqrot_ in dqrot.o :info:build "_dscal_", referenced from: :info:build _dgqvec_ in dgqvec.o :info:build _dqr1up_ in dqr1up.o :info:build _dqrinc_ in dqrinc.o :info:build "_dswap_", referenced from: :info:build _dlup1up_ in dlup1up.o :info:build "_dtrsv_", referenced from: :info:build _dch1dn_ in dch1dn.o :info:build _dchinx_ in dchinx.o :info:build _dlup1up_ in dlup1up.o :info:build "_dznrm2_", referenced from: :info:build _zch1dn_ in zch1dn.o :info:build _zchinx_ in zchinx.o :info:build _zgqvec_ in zgqvec.o :info:build _zqr1up_ in zqr1up.o :info:build _zqrinc_ in zqrinc.o :info:build "_lsame_", referenced from: :info:build _cqrot_ in cqrot.o :info:build _dqrot_ in dqrot.o :info:build _sqrot_ in sqrot.o :info:build _zqrot_ in zqrot.o :info:build "_saxpy_", referenced from: :info:build _sgqvec_ in sgqvec.o :info:build _sqr1up_ in sqr1up.o :info:build _sqrinc_ in sqrinc.o :info:build _slup1up_ in slup1up.o :info:build "_scnrm2_", referenced from: :info:build _cch1dn_ in cch1dn.o :info:build _cchinx_ in cchinx.o :info:build _cgqvec_ in cgqvec.o :info:build _cqr1up_ in cqr1up.o :info:build _cqrinc_ in cqrinc.o :info:build "_scopy_", referenced from: :info:build _schdex_ in schdex.o :info:build _schinx_ in schinx.o :info:build _schshx_ in schshx.o :info:build _sqrdec_ in sqrdec.o :info:build _sqrder_ in sqrder.o :info:build _sqrinc_ in sqrinc.o :info:build _sqrinr_ in sqrinr.o :info:build ... :info:build "_sdot_", referenced from: :info:build _sgqvec_ in sgqvec.o :info:build _sqr1up_ in sqr1up.o :info:build _sqrinc_ in sqrinc.o :info:build "_sgemv_", referenced from: :info:build _slup1up_ in slup1up.o :info:build "_sger_", referenced from: :info:build _slup1up_ in slup1up.o :info:build "_slamch_", referenced from: :info:build _cqr1up_ in cqr1up.o :info:build _sqr1up_ in sqr1up.o :info:build "_slartg_", referenced from: :info:build _sch1dn_ in sch1dn.o :info:build _sch1up_ in sch1up.o :info:build _sqhqr_ in sqhqr.o :info:build _sqrtv1_ in sqrtv1.o :info:build "_snrm2_", referenced from: :info:build _sch1dn_ in sch1dn.o :info:build _schinx_ in schinx.o :info:build _sgqvec_ in sgqvec.o :info:build _sqr1up_ in sqr1up.o :info:build _sqrinc_ in sqrinc.o :info:build "_srot_", referenced from: :info:build _sqr1up_ in sqr1up.o :info:build _sqrot_ in sqrot.o :info:build "_sscal_", referenced from: :info:build _sgqvec_ in sgqvec.o :info:build _sqr1up_ in sqr1up.o :info:build _sqrinc_ in sqrinc.o :info:build "_sswap_", referenced from: :info:build _slup1up_ in slup1up.o :info:build "_strsv_", referenced from: :info:build _sch1dn_ in sch1dn.o :info:build _schinx_ in schinx.o :info:build _slup1up_ in slup1up.o :info:build "_xerbla_", referenced from: :info:build _cch1dn_ in cch1dn.o :info:build _cchdex_ in cchdex.o :info:build _cchinx_ in cchinx.o :info:build _cchshx_ in cchshx.o :info:build _cgqvec_ in cgqvec.o :info:build _cqhqr_ in cqhqr.o :info:build _cqr1up_ in cqr1up.o :info:build ... :info:build "_zaxpy_", referenced from: :info:build _zgqvec_ in zgqvec.o :info:build _zqr1up_ in zqr1up.o :info:build _zqrinc_ in zqrinc.o :info:build _zlup1up_ in zlup1up.o :info:build "_zcopy_", referenced from: :info:build _zchdex_ in zchdex.o :info:build _zchinx_ in zchinx.o :info:build _zchshx_ in zchshx.o :info:build _zqrdec_ in zqrdec.o :info:build _zqrder_ in zqrder.o :info:build _zqrinc_ in zqrinc.o :info:build _zqrinr_ in zqrinr.o :info:build ... :info:build "_zdotc_", referenced from: :info:build _zqr1up_ in zqr1up.o :info:build _zqrinc_ in zqrinc.o :info:build "_zdotu_", referenced from: :info:build _zgqvec_ in zgqvec.o :info:build "_zdscal_", referenced from: :info:build _zgqvec_ in zgqvec.o :info:build _zqr1up_ in zqr1up.o :info:build _zqrinc_ in zqrinc.o :info:build "_zgemv_", referenced from: :info:build _zlup1up_ in zlup1up.o :info:build "_zgeru_", referenced from: :info:build _zlup1up_ in zlup1up.o :info:build "_zlartg_", referenced from: :info:build _zch1dn_ in zch1dn.o :info:build _zch1up_ in zch1up.o :info:build _zqhqr_ in zqhqr.o :info:build _zqrtv1_ in zqrtv1.o :info:build "_zrot_", referenced from: :info:build _zqr1up_ in zqr1up.o :info:build _zqrot_ in zqrot.o :info:build "_zswap_", referenced from: :info:build _zlup1up_ in zlup1up.o :info:build "_ztrsv_", referenced from: :info:build _zch1dn_ in zch1dn.o :info:build _zchinx_ in zchinx.o :info:build _zlup1up_ in zlup1up.o :info:build ld: symbol(s) not found for architecture x86_64 :info:build collect2: error: ld returned 1 exit status }}} This is not a clean build log. clean the qrupdate port and try again and attach the complete main.log if it fails again. -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:1> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Comment (by sam.petulla@…): Thnks I've attached post-cleaning. -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:2> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Comment (by himpsel@…): I am having the same problem: trying to instal octave on OS X 10.8.3 with xcode 4.6.2 and qrupdate fails to build. I have attached my logfile as main.3.log -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:3> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Comment (by lawrence.ong@…): A temporary solution is to install "qrupdate -atlas". -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:7> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Comment (by vince@…): I just tried and it works just fine for me: {{{ gfortran-mp-4.7 -m64 -fimplicit-none -O3 -funroll-loops -dynamiclib -o ../libqrupdate.dylib -install_name /opt/local/lib/libqrupdate.1.dylib caxcpy.o cch1dn.o cch1up.o cchdex.o cchinx.o cchshx.o cgqvec.o cqhqr.o cqr1up.o cqrdec.o cqrder.o cqrinc.o cqrinr.o cqrot.o cqrqh.o cqrshc.o cqrtv1.o dch1dn.o dch1up.o dchdex.o dchinx.o dchshx.o dgqvec.o dqhqr.o dqr1up.o dqrdec.o dqrder.o dqrinc.o dqrinr.o dqrot.o dqrqh.o dqrshc.o dqrtv1.o sch1dn.o sch1up.o schdex.o schinx.o schshx.o sgqvec.o sqhqr.o sqr1up.o sqrdec.o sqrder.o sqrinc.o sqrinr.o sqrot.o sqrqh.o sqrshc.o sqrtv1.o zaxcpy.o zch1dn.o zch1up.o zchdex.o zchinx.o zchshx.o zgqvec.o zqhqr.o zqr1up.o zqrdec.o zqrder.o zqrinc.o zqrinr.o zqrot.o zqrqh.o zqrshc.o zqrtv1.o clu1up.o dlu1up.o slu1up.o zlu1up.o clup1up.o dlup1up.o slup1up.o zlup1up.o \ -L/opt/local/lib -ltatlas -L/opt/local/lib -llapack make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2/src' make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2' ---> Staging qrupdate into destroot . changed gid expected 0 found 80 modified ./usr missing (created) . missing (directory not created: File exists) ./Applications missing (created) ./Developer missing (created) ./Library missing (created) . changed gid expected 80 found 0 modified ./bin missing (created) ./etc missing (created) ./include missing (created) ./lib missing (created) ./lib/pkgconfig missing (created) ./libexec missing (created) ./sbin missing (created) ./share missing (created) ./share/info missing (created) ./share/man missing (created) ./share/man/cat1 missing (created) ./share/man/cat2 missing (created) ./share/man/cat3 missing (created) ./share/man/cat4 missing (created) ./share/man/cat5 missing (created) ./share/man/cat6 missing (created) ./share/man/cat7 missing (created) ./share/man/cat8 missing (created) ./share/man/cat9 missing (created) ./share/man/catl missing (created) ./share/man/catn missing (created) ./share/man/man1 missing (created) ./share/man/man2 missing (created) ./share/man/man3 missing (created) ./share/man/man4 missing (created) ./share/man/man5 missing (created) ./share/man/man6 missing (created) ./share/man/man7 missing (created) ./share/man/man8 missing (created) ./share/man/man9 missing (created) ./share/man/manl missing (created) ./share/man/mann missing (created) ./share/nls missing (created) ./share/nls/C missing (created) ./share/nls/af_ZA.ISO8859-1 missing (created) ./share/nls/af_ZA.ISO8859-15 missing (created) ./share/nls/bg_BG.CP1251 missing (created) ./share/nls/cs_CZ.ISO8859-2 missing (created) ./share/nls/da_DK.ISO8859-1 missing (created) ./share/nls/da_DK.ISO8859-15 missing (created) ./share/nls/de_AT.ISO8859-1 missing (created) ./share/nls/de_AT.ISO8859-15 missing (created) ./share/nls/de_CH.ISO8859-1 missing (created) ./share/nls/de_CH.ISO8859-15 missing (created) ./share/nls/de_DE.ISO8859-1 missing (created) ./share/nls/de_DE.ISO8859-15 missing (created) ./share/nls/el_GR.ISO8859-7 missing (created) ./share/nls/en_AU.ISO8859-1 missing (created) ./share/nls/en_AU.ISO8859-15 missing (created) ./share/nls/en_AU.US-ASCII missing (created) ./share/nls/en_CA.ISO8859-1 missing (created) ./share/nls/en_CA.ISO8859-15 missing (created) ./share/nls/en_CA.US-ASCII missing (created) ./share/nls/en_GB.ISO8859-1 missing (created) ./share/nls/en_GB.ISO8859-15 missing (created) ./share/nls/en_GB.US-ASCII missing (created) ./share/nls/en_NZ.ISO8859-1 missing (created) ./share/nls/en_NZ.ISO8859-15 missing (created) ./share/nls/en_NZ.US-ASCII missing (created) ./share/nls/en_US.ISO8859-1 missing (created) ./share/nls/en_US.ISO8859-15 missing (created) ./share/nls/es_ES.ISO8859-1 missing (created) ./share/nls/es_ES.ISO8859-15 missing (created) ./share/nls/et_EE.ISO8859-15 missing (created) ./share/nls/fi_FI.ISO8859-1 missing (created) ./share/nls/fi_FI.ISO8859-15 missing (created) ./share/nls/fr_BE.ISO8859-1 missing (created) ./share/nls/fr_BE.ISO8859-15 missing (created) ./share/nls/fr_CA.ISO8859-1 missing (created) ./share/nls/fr_CA.ISO8859-15 missing (created) ./share/nls/fr_CH.ISO8859-1 missing (created) ./share/nls/fr_CH.ISO8859-15 missing (created) ./share/nls/fr_FR.ISO8859-1 missing (created) ./share/nls/fr_FR.ISO8859-15 missing (created) ./share/nls/hi_IN.ISCII-DEV missing (created) ./share/nls/hr_HR.ISO8859-2 missing (created) ./share/nls/hu_HU.ISO8859-2 missing (created) ./share/nls/is_IS.ISO8859-1 missing (created) ./share/nls/is_IS.ISO8859-15 missing (created) ./share/nls/it_CH.ISO8859-1 missing (created) ./share/nls/it_CH.ISO8859-15 missing (created) ./share/nls/it_IT.ISO8859-1 missing (created) ./share/nls/it_IT.ISO8859-15 missing (created) ./share/nls/ja_JP.SJIS missing (created) ./share/nls/ja_JP.eucJP missing (created) ./share/nls/ko_KR.eucKR missing (created) ./share/nls/la_LN.ISO8859-1 missing (created) ./share/nls/la_LN.ISO8859-15 missing (created) ./share/nls/la_LN.ISO8859-2 missing (created) ./share/nls/la_LN.ISO8859-4 missing (created) ./share/nls/la_LN.US-ASCII missing (created) ./share/nls/lt_LT.ISO8859-4 missing (created) ./share/nls/nl_BE.ISO8859-1 missing (created) ./share/nls/nl_BE.ISO8859-15 missing (created) ./share/nls/nl_NL.ISO8859-1 missing (created) ./share/nls/nl_NL.ISO8859-15 missing (created) ./share/nls/no_NO.ISO8859-1 missing (created) ./share/nls/no_NO.ISO8859-15 missing (created) ./share/nls/pl_PL.ISO8859-2 missing (created) ./share/nls/pt_BR.ISO8859-1 missing (created) ./share/nls/pt_PT.ISO8859-1 missing (created) ./share/nls/pt_PT.ISO8859-15 missing (created) ./share/nls/ro_RO.ISO8859-2 missing (created) ./share/nls/ru_RU.CP866 missing (created) ./share/nls/ru_RU.ISO8859-5 missing (created) ./share/nls/ru_RU.KOI8-R missing (created) ./share/nls/sk_SK.ISO8859-2 missing (created) ./share/nls/sl_SI.ISO8859-2 missing (created) ./share/nls/sv_SE.ISO8859-1 missing (created) ./share/nls/sv_SE.ISO8859-15 missing (created) ./share/nls/tr_TR.ISO8859-9 missing (created) ./share/nls/uk_UA.ISO8859-5 missing (created) ./share/nls/uk_UA.KOI8-U missing (created) ./share/nls/zh_CN.eucCN missing (created) ./share/nls/zh_TW.Big5 missing (created) ./share/skel missing (created) ./src missing (created) ./var missing (created) ./www missing (created) make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2' make -C src/ install make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2/src' install -m644 ../libqrupdate.dylib /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/destroot/opt/local/lib/libqrupdate.1.1.dylib ln -s libqrupdate.1.1.dylib /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/destroot/opt/local/lib/libqrupdate.1.dylib ln -s libqrupdate.1.1.dylib /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/destroot/opt/local/lib/libqrupdate.dylib install -m644 ../libqrupdate.a /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/destroot/opt/local/lib/libqrupdate.a make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2/src' make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2' ---> Installing qrupdate @1.1.2_2+atlas+gcc47 … }}} It seems somehow your Atlas library are buggy. What is the output of: {{{ ls -l /opt/local/lib/lib*atlas* }}} and {{{ ls -l /opt/local/lib/liblapack.a }}} ? -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:8> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Comment (by lawrence.ong@…): I am running Xcode 4.6.2 on Mac OS X 10.8.3. Atlas compiles fine. But qrupdate fails with the following error: {{{ libtool -o ../libqrupdate.a caxcpy.o cch1dn.o cch1up.o cchdex.o cchinx.o cchshx.o cgqvec.o cqhqr.o cqr1up.o cqrdec.o cqrder.o cqrinc.o cqrinr.o cqrot.o cqrqh.o cqrshc.o cqrtv1.o dch1dn.o dch1up.o dchdex.o dchinx.o dchshx.o dgqvec.o dqhqr.o dqr1up.o dqrdec.o dqrder.o dqrinc.o dqrinr.o dqrot.o dqrqh.o dqrshc.o dqrtv1.o sch1dn.o sch1up.o schdex.o schinx.o schshx.o sgqvec.o sqhqr.o sqr1up.o sqrdec.o sqrder.o sqrinc.o sqrinr.o sqrot.o sqrqh.o sqrshc.o sqrtv1.o zaxcpy.o zch1dn.o zch1up.o zchdex.o zchinx.o zchshx.o zgqvec.o zqhqr.o zqr1up.o zqrdec.o zqrder.o zqrinc.o zqrinr.o zqrot.o zqrqh.o zqrshc.o zqrtv1.o clu1up.o dlu1up.o slu1up.o zlu1up.o clup1up.o dlup1up.o slup1up.o zlup1up.o make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2/src' Undefined symbols for architecture x86_64: ... ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status make[1]: *** [../libqrupdate.dylib] Error 1 make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2/src' make: *** [solib] Error 2 make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2' Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2" && /usr/bin/make -j4 -w lib solib PREFIX=/opt/local BLAS="-framework Accelerate" LAPACK="-framework Accelerate" BLAS="-L/opt/local/lib -ltatlas" LAPACK="-L/opt/local/lib -llapack" }}} Atlas outputs are as follows: {{{ $ ls -l /opt/local/lib/lib*atlas* -rw-r--r-- 1 root wheel 6215920 14 May 13:30 /opt/local/lib/libatlas.a -rwxr-xr-x 1 root wheel 4121352 14 May 13:30 /opt/local/lib/libsatlas.dylib -rwxr-xr-x 1 root wheel 4227648 14 May 13:30 /opt/local/lib/libtatlas.dylib }}} and {{{ $ ls -l /opt/local/lib/liblapack.a -rw-r--r-- 1 root wheel 587024 14 May 13:30 /opt/local/lib/liblapack.a }}} -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:9> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Comment (by vince@…): Replying to [comment:9 lawrence.ong@…]:
I am running Xcode 4.6.2 on Mac OS X 10.8.3.
Atlas compiles fine. But qrupdate fails with the following error: {{{ Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2" && /usr/bin/make -j4 -w lib solib PREFIX=/opt/local BLAS="-framework Accelerate" LAPACK="-framework Accelerate" BLAS="-L/opt/local/lib -ltatlas" LAPACK="-L/opt/local/lib -llapack" }}}
Atlas outputs are as follows: […]
Your Atlas libraries look correct. However it appears the command you execute defines BLAS and LAPACK twice, first to use Accelerate framework and then to use Atlas instead. This is probably causing the linking mess you experience. -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:10> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Comment (by vince@…):
Atlas outputs are as follows: {{{ $ ls -l /opt/local/lib/lib*atlas* -rw-r--r-- 1 root wheel 6215920 14 May 13:30 /opt/local/lib/libatlas.a -rwxr-xr-x 1 root wheel 4121352 14 May 13:30 /opt/local/lib/libsatlas.dylib -rwxr-xr-x 1 root wheel 4227648 14 May 13:30 /opt/local/lib/libtatlas.dylib }}}
Contrarily to what I wrote in my previous message, and after checking on my own machines, your lib?atlas seem more than slender. They should weigh around 10 MiB for each architecture your built Atlas for. So, in your case, there is obviously something wrong with Atlas, and the symbols looked for by the linker are probably not there. What output gives you {{{ nm /opt/local/lib/libtalas.dylib | grep _caxpy_ }}} ? -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:11> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Comment (by lawrence.ong@…): Thanks, Vince. You are right that the problem is with BLAS/LPACK and the lib?atlas libraries. The issue is caused by gcc47 being removed from atlas's dependencies recently (in March I think). Without gcc47 (which provides gfortran- mp-4.7), Atlas compiles without the Fortran API. This gives a smaller lib?atlas.dylib files. The fix is to put gcc47 back as Atlas's dependency. This gives the following output: {{{ $ ls -l /opt/local/lib/lib*atlas* -rw-r--r-- 1 root wheel 6607552 16 May 13:50 /opt/local/lib/libatlas.a -rwxr-xr-x 1 root wheel 10696672 16 May 13:50 /opt/local/lib/libsatlas.dylib -rwxr-xr-x 1 root wheel 10802920 16 May 13:50 /opt/local/lib/libtatlas.dylib }}} If you had gcc installed before installing atlas and octave, you will not have this issue. -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:12> MacPorts <http://www.macports.org/> Ports system for OS X
#38966: qrupdate build error ----------------------------+-------------------------------- Reporter: sam.petulla@… | Owner: macports-tickets@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: wontfix | Keywords: Port: qrupdate | ----------------------------+-------------------------------- Changes (by vince@…): * status: new => closed * resolution: => wontfix Comment: You’re right. Since this not related to qrupdate, I close this ticket, and I have reopened another with the correct diagnosis (#39119) that I’ll fix later today. Thanks for your sharpness and patience. -- Ticket URL: <https://trac.macports.org/ticket/38966#comment:13> MacPorts <http://www.macports.org/> Ports system for OS X
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