#21468: apbs-1.1.0-1 --------------------------------------+------------------------------------- Reporter: howarth@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: science | Port: apbs --------------------------------------+------------------------------------- Comment(by howarth@…): To test apbs in pymol, execute the following steps after install the apbs package... cp /opt/local/lib/pymol/data/tut/1hpv.pdb . pymol Select the File->Open menu item and select the copy of 1hpv.pdb. Select the Plugins->APBS Tools... menu item Click on the "Set grid" button in the Pymol APBS Tools window. Click on the "Run APBS" button in the Pymol APBS Tools window. Wait for the apbs run to complete at which point the buttons in the APBS Tools window will work again. Select the VIsualization tab in the Pymol APBS Tools window and click the Update button. Click the Show button under the Molecular Surface section of the Visualization panel. -- Ticket URL: <http://trac.macports.org/ticket/21468#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS

#21468: apbs-1.1.0-1 --------------------------------------+------------------------------------- Reporter: howarth@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: science | Port: apbs --------------------------------------+------------------------------------- Comment(by macsforever2000@…): I made some fixes to the portfile, but I see the following error: {{{ ---> Building apbs Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_apbs/work/apbs-1.1.0-source" && make all " returned error 2 Command output: make: *** No rule to make target `all'. Stop. Error: Status 1 encountered during processing. }}} -- Ticket URL: <http://trac.macports.org/ticket/21468#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS

#21468: apbs-1.1.0-1 --------------------------------------+------------------------------------- Reporter: howarth@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: science | Port: apbs --------------------------------------+------------------------------------- Comment(by macsforever2000@…): Heh, some fix eh? I added it back but now I see this error (also with the original portfile). {{{ ---> Staging apbs into destroot Error: Target org.macports.destroot returned: shell command "cd /opt/local/var/macports/build/_opt_mports_trunk_dports_science_apbs/work/apbs-1.1.0-source; make install DESTDIR=/opt/local/var/macports/build/_opt_mports_trunk_dports_science_apbs/work/destroot INSTALL='install -p' CPPROG='cp -p'" returned error 2 Command output: Making install in opal Making install in ZSI Making install in . make[5]: Nothing to be done for `install-exec-am'. mkdir -p @INSTALL_DIR@/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6 setup.py install --prefix=@INSTALL_DIR@/opt/local running install Checking .pth file support in @INSTALL_DIR@/opt/local/lib/python2.6/site- packages/ error: can't create or remove files in install directory The following error occurred while trying to add or remove files in the installation directory: [Errno 2] No such file or directory: '@INSTALL_DIR@/opt/local/lib/python2.6/site-packages/test-easy- install-43824.pth' The installation directory you specified (via --install-dir, --prefix, or the distutils default setting) was: @INSTALL_DIR@/opt/local/lib/python2.6/site-packages/ This directory does not currently exist. Please create it and try again, or choose a different installation directory (using the -d or --install-dir option). make[5]: *** [install-data-local] Error 1 make[4]: *** [install-am] Error 2 make[3]: *** [install-recursive] Error 1 make[2]: *** [install-recursive] Error 1 make[1]: *** [install-recursive] Error 1 make: *** [install-recursive] Error 1 Error: Status 1 encountered during processing. }}} -- Ticket URL: <http://trac.macports.org/ticket/21468#comment:6> MacPorts <http://www.macports.org/> Ports system for Mac OS

#21468: apbs-1.1.0-1 --------------------------------------+------------------------------------- Reporter: howarth@… | Owner: macports-tickets@… Type: submission | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Keywords: science | Port: apbs --------------------------------------+------------------------------------- Comment(by macsforever2000@…): py26-zsi added in r59805. -- Ticket URL: <http://trac.macports.org/ticket/21468#comment:8> MacPorts <http://www.macports.org/> Ports system for Mac OS

#21468: apbs-1.1.0-1 ---------------------------------------+------------------------------------ Reporter: howarth@… | Owner: macports-tickets@… Type: submission | Status: closed Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Resolution: fixed | Keywords: science Port: apbs | ---------------------------------------+------------------------------------ Comment(by howarth@…): Actually we can reduce the python build a bit more since only ApbsClient.py is provided by apbs. The remaining files were from contrib's ZSI. -- Ticket URL: <http://trac.macports.org/ticket/21468#comment:10> MacPorts <http://www.macports.org/> Ports system for Mac OS

#21468: apbs-1.1.0-1 ---------------------------------------+------------------------------------ Reporter: howarth@… | Owner: macports-tickets@… Type: submission | Status: closed Priority: Normal | Milestone: Component: ports | Version: 1.8.0 Resolution: fixed | Keywords: science Port: apbs | ---------------------------------------+------------------------------------ Comment(by macsforever2000@…): I committed your changes in r61626. -- Ticket URL: <http://trac.macports.org/ticket/21468#comment:12> MacPorts <http://www.macports.org/> Ports system for Mac OS