[MacPorts] #31415: netcdf 4.1.3 Error ld: library not found for -lsz
#31415: netcdf 4.1.3 Error ld: library not found for -lsz -----------------------------------+---------------------------------------- Reporter: ryan.manger@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: -----------------------------------+---------------------------------------- OS version - Lion 10.7.1[[BR]] XCode version 4.1 (4B110) make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf/cfcheck' depbase=`echo cfcheck.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /Developer/usr/bin/llvm-gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I../src -I../.. -I../../include -I../../liblib -I/opt/local/include -DNDEBUG -pipe -O2 -fno-common -arch x86_64 -MT cfcheck.o -MD -MP -MF $depbase.Tpo -c -o cfcheck.o cfcheck.c &&\[[BR]] mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /Developer/usr/bin/llvm-gcc-4.2 -pipe -O2 -fno-common -arch x86_64 ../../liblib/libnetcdf.la -L/opt/local/lib -lhdf5_hl -lhdf5 -lz -L/opt/local/lib -lsz -lm -L/opt/local/lib -arch x86_64 -L/opt/local/lib -o cfcheck cfcheck.o [[BR]] libtool: link: /Developer/usr/bin/llvm-gcc-4.2 -pipe -O2 -fno-common -arch x86_64 -arch x86_64 -o .libs/cfcheck cfcheck.o ../../liblib/.libs/libnetcdf.dylib -L/opt/local/lib /opt/local/lib/libcurl.dylib /opt/local/lib/libidn.dylib /opt/local/lib/libintl.dylib -lc /opt/local/lib/libiconv.dylib -lssl -lcrypto /opt/local/lib/libhdf5_hl.dylib /opt/local/lib/libhdf5.dylib -lz -lsz -lm[[BR]] ld: library not found for -lsz[[BR]] collect2: ld returned 1 exit status[[BR]] make[4]: *** [cfcheck] Error 1[[BR]] make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf/cfcheck'[[BR]] make[3]: *** [all-recursive] Error 1[[BR]] make[3]: Leaving directory [[BR]] `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf'[[BR]] make[2]: *** [all] Error 2[[BR]] make[2]: Leaving directory`/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf'[[BR]] make[1]: *** [all-recursive] Error 1[[BR]] make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3'[[BR]] make: *** [all] Error 2[[BR]] make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3'[[BR]] shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3" && /usr/bin/make -j4 -w all " returned error 2[[BR]] Error: Target org.macports.build returned: shell command failed (see log for details)[[BR]] DEBUG: Backtrace: shell command failed (see log for details) while executing "command_exec build" (procedure "portbuild::build_main" line 8)[[BR]] invoked from within "$procedure $targetname"[[BR]] Warning: the following items did not execute (for netcdf): org.macports.activate org.macports.build org.macports.destroot org.macports.install[[BR]] Log for netcdf is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/main.log[[BR]] Error: Status 1 encountered during processing.[[BR]] To report a bug, see <http://guide.macports.org/#project.tickets> -- Ticket URL: <https://trac.macports.org/ticket/31415> MacPorts <http://www.macports.org/> Ports system for Mac OS
#31415: netcdf 4.1.3 Error ld: library not found for -lsz -----------------------------------+---------------------------------------- Reporter: ryan.manger@… | Owner: takeshi@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: netcdf -----------------------------------+---------------------------------------- Changes (by ryandesign@…): * owner: macports-tickets@… => takeshi@… * port: => netcdf Old description:
OS version - Lion 10.7.1[[BR]] XCode version 4.1 (4B110)
make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf/cfcheck' depbase=`echo cfcheck.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /Developer/usr/bin/llvm-gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I../src -I../.. -I../../include -I../../liblib -I/opt/local/include -DNDEBUG -pipe -O2 -fno-common -arch x86_64 -MT cfcheck.o -MD -MP -MF $depbase.Tpo -c -o cfcheck.o cfcheck.c &&\[[BR]]
mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /Developer/usr/bin/llvm-gcc-4.2 -pipe -O2 -fno-common -arch x86_64 ../../liblib/libnetcdf.la -L/opt/local/lib -lhdf5_hl -lhdf5 -lz -L/opt/local/lib -lsz -lm -L/opt/local/lib -arch x86_64 -L/opt/local/lib -o cfcheck cfcheck.o [[BR]] libtool: link: /Developer/usr/bin/llvm-gcc-4.2 -pipe -O2 -fno-common -arch x86_64 -arch x86_64 -o .libs/cfcheck cfcheck.o ../../liblib/.libs/libnetcdf.dylib -L/opt/local/lib /opt/local/lib/libcurl.dylib /opt/local/lib/libidn.dylib /opt/local/lib/libintl.dylib -lc /opt/local/lib/libiconv.dylib -lssl -lcrypto /opt/local/lib/libhdf5_hl.dylib /opt/local/lib/libhdf5.dylib -lz -lsz -lm[[BR]] ld: library not found for -lsz[[BR]] collect2: ld returned 1 exit status[[BR]] make[4]: *** [cfcheck] Error 1[[BR]] make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf/cfcheck'[[BR]] make[3]: *** [all-recursive] Error 1[[BR]] make[3]: Leaving directory [[BR]] `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf'[[BR]] make[2]: *** [all] Error 2[[BR]] make[2]: Leaving directory`/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf'[[BR]] make[1]: *** [all-recursive] Error 1[[BR]] make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3'[[BR]] make: *** [all] Error 2[[BR]] make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3'[[BR]] shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3" && /usr/bin/make -j4 -w all " returned error 2[[BR]] Error: Target org.macports.build returned: shell command failed (see log for details)[[BR]] DEBUG: Backtrace: shell command failed (see log for details) while executing "command_exec build" (procedure "portbuild::build_main" line 8)[[BR]] invoked from within "$procedure $targetname"[[BR]] Warning: the following items did not execute (for netcdf): org.macports.activate org.macports.build org.macports.destroot org.macports.install[[BR]] Log for netcdf is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/main.log[[BR]] Error: Status 1 encountered during processing.[[BR]] To report a bug, see <http://guide.macports.org/#project.tickets>
New description: OS version - Lion 10.7.1[[BR]] XCode version 4.1 (4B110) {{{ make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf/cfcheck' depbase=`echo cfcheck.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /Developer/usr/bin/llvm-gcc-4.2 -DHAVE_CONFIG_H -I. -I.. -I../src -I../.. -I../../include -I../../liblib -I/opt/local/include -DNDEBUG -pipe -O2 -fno-common -arch x86_64 -MT cfcheck.o -MD -MP -MF $depbase.Tpo -c -o cfcheck.o cfcheck.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /Developer/usr/bin/llvm-gcc-4.2 -pipe -O2 -fno-common -arch x86_64 ../../liblib/libnetcdf.la -L/opt/local/lib -lhdf5_hl -lhdf5 -lz -L/opt/local/lib -lsz -lm -L/opt/local/lib -arch x86_64 -L/opt/local/lib -o cfcheck cfcheck.o libtool: link: /Developer/usr/bin/llvm-gcc-4.2 -pipe -O2 -fno-common -arch x86_64 -arch x86_64 -o .libs/cfcheck cfcheck.o ../../liblib/.libs/libnetcdf.dylib -L/opt/local/lib /opt/local/lib/libcurl.dylib /opt/local/lib/libidn.dylib /opt/local/lib/libintl.dylib -lc /opt/local/lib/libiconv.dylib -lssl -lcrypto /opt/local/lib/libhdf5_hl.dylib /opt/local/lib/libhdf5.dylib -lz -lsz -lm ld: library not found for -lsz collect2: ld returned 1 exit status make[4]: *** [cfcheck] Error 1 make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf/cfcheck' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf' make[2]: *** [all] Error 2 make[2]: Leaving directory`/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3/libcf' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3' make: *** [all] Error 2 make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3' shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/work/netcdf-4.1.3" && /usr/bin/make -j4 -w all " returned error 2 Error: Target org.macports.build returned: shell command failed (see log for details) DEBUG: Backtrace: shell command failed (see log for details) while executing "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "$procedure $targetname" Warning: the following items did not execute (for netcdf): org.macports.activate org.macports.build org.macports.destroot org.macports.install Log for netcdf is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_netcdf/netcdf/main.log Error: Status 1 encountered during processing. To report a bug, see <http://guide.macports.org/#project.tickets> }}} -- Comment: Sounds like it needs a dependency on szip. -- Ticket URL: <https://trac.macports.org/ticket/31415#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS
#31415: netcdf 4.1.3 Error ld: library not found for -lsz -----------------------------------+---------------------------------------- Reporter: ryan.manger@… | Owner: takeshi@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: netcdf -----------------------------------+---------------------------------------- Comment(by macporter90210@…): Yes, installing szip fixes it. -- Ticket URL: <https://trac.macports.org/ticket/31415#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS
#31415: netcdf 4.1.3 Error ld: library not found for -lsz -----------------------------------+---------------------------------------- Reporter: ryan.manger@… | Owner: takeshi@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: netcdf -----------------------------------+---------------------------------------- Comment(by takeshi@…): hdf5-18 depends upon szip. -- Ticket URL: <https://trac.macports.org/ticket/31415#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS
#31415: netcdf 4.1.3 Error ld: library not found for -lsz -----------------------------------+---------------------------------------- Reporter: ryan.manger@… | Owner: takeshi@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: netcdf -----------------------------------+---------------------------------------- Comment(by ryan.manger@…): Installing szip fixed it for me. Thank you. -- Ticket URL: <https://trac.macports.org/ticket/31415#comment:4> MacPorts <http://www.macports.org/> Ports system for Mac OS
#31415: netcdf 4.1.3 Error ld: library not found for -lsz -----------------------------------+---------------------------------------- Reporter: ryan.manger@… | Owner: takeshi@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Keywords: | Port: netcdf -----------------------------------+---------------------------------------- Changes (by ryandesign@…): * cc: janderssen@… (added) Comment: Has duplicate #31487. Takeshi, hdf5-18 only depends on szip if the +szip variant is selected, otherwise it does not, and this variant is not on by default. If netcdf is going to always request szip functionality in its +netcdf4 variant (which it does, and this variant is on by default), then it should always declare a dependency on the szip port. -- Ticket URL: <https://trac.macports.org/ticket/31415#comment:5> MacPorts <http://www.macports.org/> Ports system for Mac OS
#31415: netcdf 4.1.3 Error ld: library not found for -lsz ------------------------------------+--------------------------------------- Reporter: ryan.manger@… | Owner: takeshi@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Resolution: fixed | Keywords: Port: netcdf | ------------------------------------+--------------------------------------- Changes (by takeshi@…): * status: new => closed * resolution: => fixed Comment: Fixed in r84889. Asked mmoll to consider making szip to be a default variant. -- Ticket URL: <https://trac.macports.org/ticket/31415#comment:6> MacPorts <http://www.macports.org/> Ports system for Mac OS
#31415: netcdf 4.1.3 Error ld: library not found for -lsz ------------------------------------+--------------------------------------- Reporter: ryan.manger@… | Owner: takeshi@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.0.3 Resolution: fixed | Keywords: Port: netcdf | ------------------------------------+--------------------------------------- Comment(by ryandesign@…): Has duplicate #31449. -- Ticket URL: <https://trac.macports.org/ticket/31415#comment:7> MacPorts <http://www.macports.org/> Ports system for Mac OS
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