#48054: py-pbspy: Incorrect permissions on [..]/site-packages/obspy/taup/data ----------------------------+-------------------------------- Reporter: andy.nowacki@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.3 Keywords: | Port: py-obspy ----------------------------+-------------------------------- ObsPy (as of trunk r137599) has a problem with file permissions. Specifically, the code requires read access to the following files and directories by a normal user, but they are currently set as readable only by root:wheel: 1. ${prefix}/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy-0.10.2-py2.7.egg-info {{{ $ ls -l /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy-0.10.2-py2.7.egg-info/ total 160 -rw------- 1 root wheel 2611 19 May 20:28 PKG-INFO -rw------- 1 root wheel 47494 19 May 20:28 SOURCES.txt -rw------- 1 root wheel 1 19 May 20:28 dependency_links.txt -rw------- 1 root wheel 7552 19 May 20:28 entry_points.txt -rw------- 1 root wheel 1 19 May 20:28 namespace_packages.txt -rw------- 1 root wheel 1 15 May 19:36 not-zip-safe -rw------- 1 root wheel 141 19 May 20:28 requires.txt -rw------- 1 root wheel 166 19 May 20:28 top_level.txt }}} This directory sometimes itself lacks execution permission for all users, but I could not reliably reproduce this when uninstalling and installing ObsPy to test. 2. ${prefix}/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/data {{{ $ ls -l /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/data total 616 -rw------- 1 root wheel 81 15 May 19:31 README.txt -rw------- 1 root wheel 144910 15 May 19:31 ak135.npz -rw------- 1 root wheel 6413 15 May 19:31 ak135.tvel -rw------- 1 root wheel 145978 15 May 19:31 iasp91.npz -rw------- 1 root wheel 5761 15 May 19:31 iasp91.tvel }}} The code below shows both the errors and my interim fix. {{{ $ cat /tmp/test.py from obspy.taup import TauPyModel m = TauPyModel() $ $ python2.7 /tmp/test.py && echo success Traceback (most recent call last): File "/tmp/test.py", line 1, in <module> from obspy.taup import TauPyModel File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/__init__.py", line 36, in <module> from obspy.core.utcdatetime import UTCDateTime # NOQA File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/core/__init__.py", line 107, in <module> from obspy.core.util.attribdict import AttribDict File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/core/util/__init__.py", line 40, in <module> from obspy.core.util.obspy_types import (ComplexWithUncertainties, Enum, File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/core/util/obspy_types.py", line 16, in <module> with standard_library.hooks(): File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/future/standard_library/__init__.py", line 323, in __enter__ install_hooks() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/future/standard_library/__init__.py", line 528, in install_hooks install_aliases() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/future/standard_library/__init__.py", line 482, in install_aliases import test File "/private/tmp/test.py", line 2, in <module> m = TauPyModel() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/tau.py", line 317, in __init__ self.model = TauModel.from_file(model) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/tau_model.py", line 600, in from_file return TauModel.deserialize(filename) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/tau_model.py", line 520, in deserialize npz = np.load(filename) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/numpy/lib/npyio.py", line 369, in load fid = open(file, "rb") IOError: [Errno 13] Permission denied: u'/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/data/iasp91.npz' $ $ sudo chmod a+r /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy-0.10.2-py2.7.egg-info/* $ python2.7 /tmp/test.py && echo success Traceback (most recent call last): File "/tmp/test.py", line 1, in <module> from obspy.taup import TauPyModel File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/__init__.py", line 36, in <module> from obspy.core.utcdatetime import UTCDateTime # NOQA File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/core/__init__.py", line 107, in <module> from obspy.core.util.attribdict import AttribDict File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/core/util/__init__.py", line 40, in <module> from obspy.core.util.obspy_types import (ComplexWithUncertainties, Enum, File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/core/util/obspy_types.py", line 16, in <module> with standard_library.hooks(): File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/future/standard_library/__init__.py", line 323, in __enter__ install_hooks() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/future/standard_library/__init__.py", line 528, in install_hooks install_aliases() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/future/standard_library/__init__.py", line 482, in install_aliases import test File "/private/tmp/test.py", line 2, in <module> m = TauPyModel() File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/tau.py", line 317, in __init__ self.model = TauModel.from_file(model) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/tau_model.py", line 600, in from_file return TauModel.deserialize(filename) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/tau_model.py", line 520, in deserialize npz = np.load(filename) File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/numpy/lib/npyio.py", line 369, in load fid = open(file, "rb") IOError: [Errno 13] Permission denied: u'/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/data/iasp91.npz' $ $ sudo chmod a+x /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/data $ sudo chmod a+r /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/obspy/taup/data/* $ python2.7 /tmp/test.py && echo success success }}} My apologies for not presenting a patch to fix this, but I doubt that just adding the chmod commands would be a satisfactory fix. -- Ticket URL: <https://trac.macports.org/ticket/48054> MacPorts <https://www.macports.org/> Ports system for OS X