[MacPorts] #39715: Update raxml to version 7.6.6
#39715: Update raxml to version 7.6.6 -------------------------+-------------------------------- Reporter: mattoates@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: | Port: raxml -------------------------+-------------------------------- The RAxML project is now hosted on GitHub which is the only source of distfiles, so the Portifle has been updated for this. Additionally I've tried to patch in a port variant for AVX Intel extensions for i7 CPUs, but I don't actually have a Mac with an i7 so this is untested. Can someone with an i7 review this variant and +AVX being included as default when you install. -- Ticket URL: <https://trac.macports.org/ticket/39715> MacPorts <http://www.macports.org/> Ports system for OS X
#39715: Update raxml to version 7.6.6 --------------------------+-------------------------------- Reporter: mattoates@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: raxml | --------------------------+-------------------------------- Comment (by egall@…): A few things off the top of my head: - You don't have to cc yourself, ticket reporters are automatically notified anyway - See if you can get upstream to supply an actual tag to download from, instead of just a hash - Try to use at least 2 checksums. Since you're already using sha256, the next strongest one after that (that MacPorts supports) is rmd160. -- Ticket URL: <https://trac.macports.org/ticket/39715#comment:2> MacPorts <http://www.macports.org/> Ports system for OS X
#39715: raxml @7.2.9: update to 7.6.6 --------------------------+--------------------------------- Reporter: mattoates@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Resolution: | Keywords: haspatch maintainer Port: raxml | --------------------------+--------------------------------- Changes (by larryv@…): * keywords: => haspatch maintainer * cc: mattoates@… (removed) * cc: vince@… (added) * version: 2.1.3 => Comment: Cc-ing Vincent as resident AVX expert. I don’t think all available compilers can generate AVX instructions. -- Ticket URL: <https://trac.macports.org/ticket/39715#comment:3> MacPorts <http://www.macports.org/> Ports system for OS X
#39715: raxml @7.2.9: update to 7.6.6 --------------------------+--------------------------------- Reporter: mattoates@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Resolution: | Keywords: haspatch maintainer Port: raxml | --------------------------+--------------------------------- Comment (by mattoates@…): Replying to [comment:2 egall@…]:
- You don't have to cc yourself, ticket reporters are automatically notified anyway Yeah discovered this as soon as I'd done it, thanks.
- See if you can get upstream to supply an actual tag to download from, instead of just a hash https://github.com/stamatak/standard-RAxML/issues/9 I raised an issue for this, but its an outstanding request for over 6 months and the version of raxml currently available on MacPorts is really out of date.
- Try to use at least 2 checksums. Since you're already using sha256, the next strongest one after that (that MacPorts supports) is rmd160. I've just replaced the Portfile including a the rmd160 sum
-- Ticket URL: <https://trac.macports.org/ticket/39715#comment:4> MacPorts <http://www.macports.org/> Ports system for OS X
#39715: raxml @7.2.9: update to 7.6.6 --------------------------+--------------------------------- Reporter: mattoates@… | Owner: macports-tickets@… Type: update | Status: new Priority: Normal | Milestone: Component: ports | Version: Resolution: | Keywords: haspatch maintainer Port: raxml | --------------------------+--------------------------------- Comment (by cal@…): Updated in r110682 using the v7.7.6 tag from github. -- Ticket URL: <https://trac.macports.org/ticket/39715#comment:6> MacPorts <http://www.macports.org/> Ports system for OS X
#39715: raxml @7.2.9: update to 7.6.6 --------------------------+--------------------------------- Reporter: mattoates@… | Owner: macports-tickets@… Type: update | Status: closed Priority: Normal | Milestone: Component: ports | Version: Resolution: fixed | Keywords: haspatch maintainer Port: raxml | --------------------------+--------------------------------- Changes (by cal@…): * status: new => closed * resolution: => fixed -- Ticket URL: <https://trac.macports.org/ticket/39715#comment:7> MacPorts <http://www.macports.org/> Ports system for OS X
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