#50597: py27-scipy+atlas does not import properly -----------------------+-------------------------------- Reporter: smithsp@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.4 Keywords: | Port: py27-scipy -----------------------+-------------------------------- After installing py27-scipy+atlas, scipy.interpolate will not import correctly. Here are steps I took and the output {{{ ~/OMFIT-source2 117 : sudo port install py27-scipy +atlas ---> Computing dependencies for py27-scipy ---> Deactivating py27-scipy @0.16.1_0+gfortran ---> Cleaning py27-scipy ---> Activating py27-scipy @0.16.1_0+atlas+gfortran ---> Cleaning py27-scipy ---> Scanning binaries for linking errors ---> No broken files found. ~/OMFIT-source2 118 : which python /opt/local/bin/python ~/OMFIT-source2 119 : python -c 'import scipy.interpolate' Traceback (most recent call last): File "<string>", line 1, in <module> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/interpolate/__init__.py", line 145, in <module> from .interpolate import * File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/interpolate/interpolate.py", line 15, in <module> import scipy.linalg File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/__init__.py", line 172, in <module> from .misc import * File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/misc.py", line 6, in <module> from .lapack import get_lapack_funcs File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/lapack.py", line 356, in <module> from scipy.linalg import _flapack ImportError: dlopen(/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/_flapack.so, 2): Symbol not found: _cgegv_ Referenced from: /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/_flapack.so Expected in: flat namespace in /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7 /site-packages/scipy/linalg/_flapack.so ~/OMFIT-source2 120 : sudo port selfupdate ---> Updating MacPorts base sources using rsync MacPorts base version 2.3.4 installed, MacPorts base version 2.3.4 downloaded. ---> Updating the ports tree ---> MacPorts base is already the latest version The ports tree has been updated. To upgrade your installed ports, you should run port upgrade outdated ~/OMFIT-source2 121 : port outdated | grep scipy ~/OMFIT-source2 122 : }}} Note that atlas took a long time to build, during which I closed my laptop twice, which induced the computer sleep state. The next step I plan on taking is rebuilding atlas, but will not try that until tomorrow. If there are any pointers for anything else to try, I would appreciate it. -- Ticket URL: <https://trac.macports.org/ticket/50597> MacPorts <https://www.macports.org/> Ports system for OS X