[MacPorts] #39774: py-openbabel lion install cd failure
#39774: py-openbabel lion install cd failure ---------------------+-------------------------------- Reporter: ba306@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Keywords: python | Port: ---------------------+-------------------------------- Hi, Trying to install python bindings for openbabel. Mac lion. Have been working on this for 4 days now! most recent error: version:1 :debug:main Executing org.macports.main (openbabel) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.archivefetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Wed Jul 17 12:14:16 BST 2013 :notice:configure ---> Configuring openbabel :debug:configure Using compiler 'Mac OS X clang' :debug:configure Executing proc-pre-org.macports.configure-configure-0 :debug:configure Executing org.macports.configure (openbabel) :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.7' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET=""' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure -- Using included inchi library. :info:configure -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) :info:configure CMake Error at /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:97 (message): :info:configure Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) :info:configure Call Stack (most recent call first): :info:configure /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:291 (_FPHSA_FAILURE_MESSAGE) :info:configure /opt/local/share/cmake-2.8/Modules/FindPkgConfig.cmake:102 (find_package_handle_standard_args) :info:configure cmake/modules/FindCairo.cmake:23 (find_package) :info:configure CMakeLists.txt:404 (find_package) :info:configure :info:configure :info:configure -- Configuring incomplete, errors occurred! :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure Exit code: 1 :error:configure org.macports.configure for port openbabel returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed while executing "$procedure $targetname" :info:configure Warning: targets not executed for openbabel: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :error:configure Failed to install openbabel :debug:configure couldn't open "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex": no such file or directory while executing "open [file join $dir tclIndex]" :notice:configure Please see the log file for port openbabel for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/main.log -- Ticket URL: <https://trac.macports.org/ticket/39774> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: py-openbabel install failure ---------------------------+-------------------------------- Reporter: ba306@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: py-openbabel | ---------------------------+-------------------------------- Changes (by ciserlohn@…): * keywords: python => * port: => py-openbabel Old description:
Hi, Trying to install python bindings for openbabel. Mac lion. Have been working on this for 4 days now! most recent error:
version:1 :debug:main Executing org.macports.main (openbabel) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.archivefetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Wed Jul 17 12:14:16 BST 2013 :notice:configure ---> Configuring openbabel :debug:configure Using compiler 'Mac OS X clang' :debug:configure Executing proc-pre-org.macports.configure-configure-0 :debug:configure Executing org.macports.configure (openbabel) :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.7' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET=""' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure -- Using included inchi library. :info:configure -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) :info:configure CMake Error at /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:97 (message): :info:configure Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) :info:configure Call Stack (most recent call first): :info:configure /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:291 (_FPHSA_FAILURE_MESSAGE) :info:configure /opt/local/share/cmake-2.8/Modules/FindPkgConfig.cmake:102 (find_package_handle_standard_args) :info:configure cmake/modules/FindCairo.cmake:23 (find_package) :info:configure CMakeLists.txt:404 (find_package) :info:configure :info:configure :info:configure -- Configuring incomplete, errors occurred! :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure Exit code: 1 :error:configure org.macports.configure for port openbabel returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed while executing "$procedure $targetname" :info:configure Warning: targets not executed for openbabel: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :error:configure Failed to install openbabel :debug:configure couldn't open "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex": no such file or directory while executing "open [file join $dir tclIndex]" :notice:configure Please see the log file for port openbabel for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/main.log
New description: Hi, Trying to install python bindings for openbabel. Mac lion. Have been working on this for 4 days now! most recent error: {{{ version:1 :debug:main Executing org.macports.main (openbabel) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.archivefetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (openbabel) :debug:main Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Wed Jul 17 12:14:16 BST 2013 :notice:configure ---> Configuring openbabel :debug:configure Using compiler 'Mac OS X clang' :debug:configure Executing proc-pre-org.macports.configure-configure-0 :debug:configure Executing org.macports.configure (openbabel) :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.7' CXX='/usr/bin/clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET=""' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure -- Using included inchi library. :info:configure -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) :info:configure CMake Error at /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:97 (message): :info:configure Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) :info:configure Call Stack (most recent call first): :info:configure /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:291 (_FPHSA_FAILURE_MESSAGE) :info:configure /opt/local/share/cmake-2.8/Modules/FindPkgConfig.cmake:102 (find_package_handle_standard_args) :info:configure cmake/modules/FindCairo.cmake:23 (find_package) :info:configure CMakeLists.txt:404 (find_package) :info:configure :info:configure :info:configure -- Configuring incomplete, errors occurred! :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET="" :info:configure Exit code: 1 :error:configure org.macports.configure for port openbabel returned: configure failure: command execution failed :debug:configure Error code: NONE :debug:configure Backtrace: configure failure: command execution failed while executing "$procedure $targetname" :info:configure Warning: targets not executed for openbabel: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install :error:configure Failed to install openbabel :debug:configure couldn't open "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex": no such file or directory while executing "open [file join $dir tclIndex]" :notice:configure Please see the log file for port openbabel for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/main.log }}} -- Comment: This was not a clean attempt. Please try again: {{{ $ sudo port selfupdate $ sudo port install py-openbabel }}} and attach the log file if it fails. In the future please remember to use WikiFormatting and fill in the port field. -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:1> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: openbabel configure failure ------------------------+--------------------- Reporter: ba306@… | Owner: mlund@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: openbabel | ------------------------+--------------------- Changes (by macsforever2000@…): * owner: macports-tickets@… => mlund@… * port: py-openbabel => openbabel Comment: openbabel is the port that failed. So the modified commands to run are as follows: {{{ sudo port selfupdate sudo port clean openbabel sudo port install openbabel }}} -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:2> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: openbabel configure failure ------------------------+--------------------- Reporter: ba306@… | Owner: mlund@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: openbabel | ------------------------+--------------------- Comment (by ba306@…): Thanks but that lead to the issues in the attached file -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:3> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: openbabel configure failure ------------------------+--------------------- Reporter: ba306@… | Owner: mlund@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: openbabel | ------------------------+--------------------- Comment (by ciserlohn@…): Replying to [comment:3 ba306@…]:
Thanks but that lead to the issues in the attached file
It looks like openbabel is missing a dependency on pkgconfig: {{{ Could NOT find PkgConfig }}} It works on my machine when pkgconfig is installed. It fails when pkgconfig is not installed albeit with a different error message. What's the output of? {{{ $ port installed pkgconfig }}} If it says: {{{ None of the specified ports are installed. }}} Try: {{{ $ sudo port install pkgconfig $ sudo port clean openbabel $ sudo port install openbabel }}} If it succeeds try: {{{ $ sudo port clean py-openbabel $ sudo port install py-openbabel }}} Otherwise attach the log file. -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:4> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: openbabel configure failure ------------------------+--------------------- Reporter: ba306@… | Owner: mlund@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: openbabel | ------------------------+--------------------- Comment (by ba306@…): The log file indicated that wxWidgets could not be found before it complained about pkgconfig. Installing wxWidgets installed pkgconfig, but then complained that it did not support OS X 10.7 (Lion). It recommended installed wxWidgets-devel instead, which was successful. Once that was completed, I was able to install openbabel and then py- openbabel with MacPorts. Thanks for all of your help! -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:5> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: openbabel @2.3.1 missing dependency on wxwidgets-(devel,3.0) ------------------------+--------------------- Reporter: ba306@… | Owner: mlund@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: openbabel | ------------------------+--------------------- -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:6> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: openbabel @2.3.1 missing dependency on wxwidgets-(devel,3.0) ------------------------+--------------------- Reporter: ba306@… | Owner: mlund@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: openbabel | ------------------------+--------------------- Comment (by c.herbig@…): OpenBabel does not //require// wxWidgets unless the cmake -DBUILD_GUI=ON is set. See [http://open- babel.readthedocs.org/en/latest/Installation/install.html#compiling-open- babel compiling open babel]. In the current portfile it is specifically set to off. Meanwhile the only reference the portfile (or the eigen dependency) has to pkgconfig is in this line: {{{ depends_lib path:lib/pkgconfig/cairo.pc:cairo port:libiconv port:libxml2 port:zlib }}} Perhaps that's where the issue comes from? -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:8> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: openbabel @2.3.1 missing dependency on wxwidgets-(devel,3.0) ------------------------+--------------------- Reporter: ba306@… | Owner: mlund@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: | Keywords: Port: openbabel | ------------------------+--------------------- Comment (by ciserlohn@…): Replying to [comment:8 c.herbig@…]:
OpenBabel does not //require// wxWidgets unless the cmake -DBUILD_GUI=ON is set. See [http://open- babel.readthedocs.org/en/latest/Installation/install.html#compiling-open- babel compiling open babel]. In the current portfile it is specifically set to off. Meanwhile the only reference the portfile (or the eigen dependency) has to pkgconfig is in this line: {{{ depends_lib path:lib/pkgconfig/cairo.pc:cairo port:libiconv port:libxml2 port:zlib }}}
Perhaps that's where the issue comes from?
The problem is that OpenBabel uses pkgconfig to find cairo. Have a look at http://sourceforge.net/p/openbabel/code/5041/tree/openbabel/tags/openbabel-2.... Therefore OpenBabel must declare a dependency on pkgconfig like this: {{{ depends_build port:pkgconfig }}} -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:9> MacPorts <http://www.macports.org/> Ports system for OS X
#39774: openbabel @2.3.1 missing dependency on wxwidgets-(devel,3.0) ------------------------+--------------------- Reporter: ba306@… | Owner: mlund@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.1.3 Resolution: fixed | Keywords: Port: openbabel | ------------------------+--------------------- Changes (by ciserlohn@…): * status: new => closed * resolution: => fixed Comment: Fixed in r108435. -- Ticket URL: <https://trac.macports.org/ticket/39774#comment:10> MacPorts <http://www.macports.org/> Ports system for OS X
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