[MacPorts] #23864: OpenMPI on slow leopard
#23864: OpenMPI on slow leopard --------------------------------+------------------------------------------- Reporter: biobrain@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: openmpi | Port: openmpi --------------------------------+------------------------------------------- I am trying to install OpenMPI on snow leopard, I am getting the following error {{{ sudo port install openmpi Password: Portfile changed since last build; discarding previous state. ---> Computing dependencies for openmpi ---> Fetching openmpi ---> Attempting to fetch openmpi-1.4.1.tar.bz2 from http://www.mirrorservice.org/sites/ftp.freebsd.org/pub/FreeBSD/ports/distfil... ---> Attempting to fetch openmpi-1.4.1.tar.bz2 from http://www.mirrorservice.org/sites/ftp.freebsd.org/pub/FreeBSD/ports /local-distfiles/ ---> Attempting to fetch openmpi-1.4.1.tar.bz2 from ftp://ftp.uk.FreeBSD.org/pub/FreeBSD/ports/distfiles/ ---> Attempting to fetch openmpi-1.4.1.tar.bz2 from ftp://ftp.uk.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/ ---> Attempting to fetch openmpi-1.4.1.tar.bz2 from http://www.open- mpi.de/software/ompi/v1.4/downloads/ ---> Verifying checksum(s) for openmpi ---> Extracting openmpi ---> Configuring openmpi ---> Building openmpi Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build" && /usr/bin/make -j2 all " returned error 2 Command output: /opt/local/include/mpio.h:377: error: conflicting types for 'PMPI_File_read_ordered_end' ../../../../../../../ompi/include/mpi.h:1553: error: previous declaration of 'PMPI_File_read_ordered_end' was here /opt/local/include/mpio.h:379: error: conflicting types for 'PMPI_File_write_ordered_begin' ../../../../../../../ompi/include/mpi.h:1555: error: previous declaration of 'PMPI_File_write_ordered_begin' was here /opt/local/include/mpio.h:380: error: conflicting types for 'PMPI_File_write_ordered_end' ../../../../../../../ompi/include/mpi.h:1556: error: previous declaration of 'PMPI_File_write_ordered_end' was here /opt/local/include/mpio.h:384: error: conflicting types for 'PMPI_File_get_type_extent' ../../../../../../../ompi/include/mpi.h:1558: error: previous declaration of 'PMPI_File_get_type_extent' was here /opt/local/include/mpio.h:387: error: conflicting types for 'PMPI_File_set_atomicity' ../../../../../../../ompi/include/mpi.h:1559: error: previous declaration of 'PMPI_File_set_atomicity' was here /opt/local/include/mpio.h:388: error: conflicting types for 'PMPI_File_get_atomicity' ../../../../../../../ompi/include/mpi.h:1560: error: previous declaration of 'PMPI_File_get_atomicity' was here /opt/local/include/mpio.h:389: error: conflicting types for 'PMPI_File_sync' ../../../../../../../ompi/include/mpi.h:1561: error: previous declaration of 'PMPI_File_sync' was here /opt/local/include/mpio.h:392: error: conflicting types for 'PMPI_File_set_errhandler' ../../../../../../../ompi/include/mpi.h:1479: error: previous declaration of 'PMPI_File_set_errhandler' was here /opt/local/include/mpio.h:393: error: conflicting types for 'PMPI_File_get_errhandler' ../../../../../../../ompi/include/mpi.h:1480: error: previous declaration of 'PMPI_File_get_errhandler' was here /opt/local/include/mpio.h:409: error: conflicting types for 'PMPI_File_f2c' ../../../../../../../ompi/include/mpi.h:1475: error: previous declaration of 'PMPI_File_f2c' was here /opt/local/include/mpio.h:410: error: conflicting types for 'PMPI_File_c2f' ../../../../../../../ompi/include/mpi.h:1474: error: previous declaration of 'PMPI_File_c2f' was here make[5]: *** [ad_close.lo] Error 1 make[5]: *** Waiting for unfinished jobs.... make[5]: *** [ad_aggregate.lo] Error 1 make[4]: *** [all-recursive] Error 1 make[3]: *** [all-recursive] Error 1 make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all-recursive] Error 1 }}} -- Ticket URL: <http://trac.macports.org/ticket/23864> MacPorts <http://www.macports.org/> Ports system for Mac OS
#23864: OpenMPI on slow leopard --------------------------------+------------------------------------------- Reporter: biobrain@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: openmpi | Port: openmpi --------------------------------+------------------------------------------- Comment(by biobrain@…): I have tried with the clean install and even that did not worked. Additional details obtained using a -d flag are attached in the file. -- Ticket URL: <http://trac.macports.org/ticket/23864#comment:1> MacPorts <http://www.macports.org/> Ports system for Mac OS
#23864: OpenMPI on slow leopard --------------------------------+------------------------------------------- Reporter: biobrain@… | Owner: mww@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: openmpi --------------------------------+------------------------------------------- Changes (by macsforever2000@…): * owner: macports-tickets@… => mww@… * keywords: openmpi => -- Ticket URL: <http://trac.macports.org/ticket/23864#comment:2> MacPorts <http://www.macports.org/> Ports system for Mac OS
#23864: OpenMPI on snow leopard --------------------------------+------------------------------------------- Reporter: biobrain@… | Owner: mww@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: openmpi --------------------------------+------------------------------------------- -- Ticket URL: <http://trac.macports.org/ticket/23864#comment:3> MacPorts <http://www.macports.org/> Ports system for Mac OS
#23864: OpenMPI on snow leopard --------------------------------+------------------------------------------- Reporter: biobrain@… | Owner: mww@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Keywords: | Port: openmpi --------------------------------+------------------------------------------- Comment(by toby@…): Looks like you'll be able to install if you first deactivate or uninstall the existing version. -- Ticket URL: <http://trac.macports.org/ticket/23864#comment:4> MacPorts <http://www.macports.org/> Ports system for Mac OS
#23864: OpenMPI builds against older installed version ---------------------------------+------------------------------------------ Reporter: biobrain@… | Owner: mww@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 1.8.2 Resolution: fixed | Keywords: Port: openmpi | ---------------------------------+------------------------------------------ Changes (by jmr@…): * status: new => closed * resolution: => fixed Comment: Should be fixed by r77888. -- Ticket URL: <https://trac.macports.org/ticket/23864#comment:5> MacPorts <http://www.macports.org/> Ports system for Mac OS
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