[MacPorts] #45003: Cannot install control package in Octave 3.8.1 on Mac OSX
#45003: Cannot install control package in Octave 3.8.1 on Mac OSX ----------------------------+------------------------------------ Reporter: MacPorts@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Keywords: octave control | Port: octave, octave-control ----------------------------+------------------------------------ After MacPorts upgraded octave to 3.8.1, octave could no longer load the .oct files that came with the control package. (There was no path problem, but dlopen() failed anyway, with "Reason: image not found", but the binary file was there, dated April 18, meaning it's the same one that used to work.) I uninstalled octave* and rebuilt like this (as I usually do): {{{
uname -a Darwin mycomputer.local 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64 sudo port install -f octave +fltk +atlas +gcc48 ... ---> No broken files found. port list installed | grep octave octave @3.8.1 math/octave octave ... octave:1> help tf error: help: the 'tf' function belongs to the control package from Octave Forge which seems to not be installed in your system. ... octave:1> pkg -forge install control /bin/sh: line 0: cd: sltmp: No such file or directory gfortran-mp-4.8: error: *.f: No such file or directory gfortran-mp-4.8: fatal error: no input files compilation terminated. ar: ./sltmp/*.o: No such file or directory make: *** [slicotlibrary.a] Error 1 tar -xzf slicot.tar.gz mkdir sltmp mv slicot/src/*.f ./sltmp mv slicot/src_aux/*.f ./sltmp cp TG04BX.fortran ./sltmp/TG04BX.f cd sltmp; /opt/local/bin/mkoctfile-3.8.1 -c *.f ar -rc slicotlibrary.a ./sltmp/*.o pkg: error running `make' for the control package. error: called from 'configure_make' in file /opt/local/share/octave/3.8.1/m/pkg/private/configure_make.m near line 82, column 9 error: called from: error: /opt/local/share/octave/3.8.1/m/pkg/private/install.m at line 199, column 5 error: /opt/local/share/octave/3.8.1/m/pkg/pkg.m at line 394, column 9 octave:1> exit sudo port install octave-control ... ---> Activating octave-control @2.6.0_0 ... ---> No broken files found. octave octave:1> tf(1) error: tf: /opt/local/lib/octave/packages/control-2.6.0/x86_64-apple- darwin13.0.0-api-v48+/is_real_matrix.oct: failed to load: dlopen(/opt/local/lib/octave/packages/control-2.6.0/x86_64-apple- darwin13.0.0-api-v48+/is_real_matrix.oct, 2): Library not loaded: /opt/local/lib/octave/3.6.4/liboctinterp.1.dylib Referenced from: /opt/local/lib/octave/packages/control-2.6.0/x86_64 -apple-darwin13.0.0-api-v48+/is_real_matrix.oct Reason: image not found error: called from: error: /opt/local/share/octave/packages/control-2.6.0/@tf/tf.m at line 200, column 7 octave:1> ls -l /opt/local/lib/octave/packages/control-2.6.0/x86_64-apple- darwin13.0.0-api-v48+/is_real_matrix.oct -rwxr-xr-x 1 root admin 30716 Nov 29 2013 /opt/local/lib/octave/packages/control-2.6.0/x86_64-apple- darwin13.0.0-api-v48+/is_real_matrix.oct }}}
I originally reported this to the GNU Octave bugtracker, and got this reply: ... "With either Octave 3.8.1 and 3.8.2 compiled manually on Mavericks I cannot reproduce your problem so this appears to be a MacPorts rather than an Octave problem:" {{{
pkg install -forge control For information about changes from previous versions of the control package, run 'news control'. tf (1)
Transfer function 'ans' from input 'u1' to output ... y1: 1 Static gain.
version ans = 3.8.1 }}} "... If I have to guess, though, a possible cause could be mixing clang and gfortran which, according to my experience, never worked properly on OSX. When building OSX binaries I use gcc for Octave and ALL its dependencies. In MacPorts you can do that by specifying the gccXX variant when available or specifying the compiler explicitly."
-- Ticket URL: <https://trac.macports.org/ticket/45003> MacPorts <http://www.macports.org/> Ports system for OS X
#45003: Cannot install control package in Octave 3.8.1 on Mac OSX -------------------------------------+-------------------------------- Reporter: MacPorts@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Resolution: | Keywords: octave control Port: octave, octave-control | -------------------------------------+-------------------------------- Comment (by MacPorts@…): In my original post to GNU Octave, I had octave-control-2.4.1 installed, and the failing file date was April 18 for that. The output above is for octave-control-2.6.0, where the file date is clearly Nov 29. The behavior was identical for both octave-control versions. (Just to head off any possible confusion...) -- Ticket URL: <https://trac.macports.org/ticket/45003#comment:2> MacPorts <http://www.macports.org/> Ports system for OS X
#45003: Cannot install control package in Octave 3.8.1 on Mac OSX -------------------------------------+-------------------------------- Reporter: MacPorts@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Resolution: | Keywords: Port: octave, octave-control | -------------------------------------+-------------------------------- Changes (by ryandesign@…): * cc: MacPorts@… (removed) * keywords: octave control => Comment: Please note that "`port list installed`" does not do what you think it does; see wiki:FAQ#portlist. -- Ticket URL: <https://trac.macports.org/ticket/45003#comment:3> MacPorts <http://www.macports.org/> Ports system for OS X
#45003: Cannot install control package in Octave 3.8.1 on Mac OSX -------------------------------------+-------------------------------- Reporter: MacPorts@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Resolution: | Keywords: Port: octave, octave-control | -------------------------------------+-------------------------------- Comment (by MacPorts@…): I downloaded the latest octave-control package from Octave Forge, and it fails to make as follows: {{{
cd control/src make tar -xzf slicot.tar.gz mkdir sltmp mv slicot/src/*.f ./sltmp mv slicot/src_aux/*.f ./sltmp cp TG04BX.fortran ./sltmp/TG04BX.f cd sltmp; mkoctfile -c *.f /bin/sh: line 0: cd: sltmp: No such file or directory gfortran-mp-4.8: error: *.f: No such file or directory gfortran-mp-4.8: fatal error: no input files compilation terminated. ar -rc slicotlibrary.a ./sltmp/*.o ar: ./sltmp/*.o: No such file or directory make: *** [slicotlibrary.a] Error 1 }}} This is similar to the "pkg -forge install control" failure. Interestingly, slicotlibrary.a is there, but only 8 bytes, so clearly not really there. I repeated the above by hand and it worked fine, then rewrote the Makefile until it worked also. It appears the problem is simply missing parens to put the mkoctfile line in its own subshell. The following patch works for me (Darwin localhost 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun 3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64):
{{{ diff -rcb control/src/Makefile control-jos/src/Makefile *** control/src/Makefile 2014-06-16 12:26:55.000000000 -0600 --- control-jos/src/Makefile 2014-09-17 00:48:12.000000000 -0600 *************** *** 31,37 **** mv slicot/src/*.f ./sltmp mv slicot/src_aux/*.f ./sltmp cp TG04BX.fortran ./sltmp/TG04BX.f ! cd sltmp; $(MKOCTFILE) -c *.f ar -rc slicotlibrary.a ./sltmp/*.o rm -rf sltmp slicot --- 31,37 ---- mv slicot/src/*.f ./sltmp mv slicot/src_aux/*.f ./sltmp cp TG04BX.fortran ./sltmp/TG04BX.f ! (cd ./sltmp; $(MKOCTFILE) -c *.f) ar -rc slicotlibrary.a ./sltmp/*.o rm -rf sltmp slicot }}} -- Ticket URL: <https://trac.macports.org/ticket/45003#comment:4> MacPorts <http://www.macports.org/> Ports system for OS X
#45003: Cannot install control package in Octave 3.8.1 on Mac OSX -------------------------------------+-------------------------------- Reporter: MacPorts@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Resolution: | Keywords: Port: octave, octave-control | -------------------------------------+-------------------------------- Comment (by MacPorts@…): I copied the .oct files where they belong and the failure was the same, which pointed to a missing /opt/local/lib/octave/3.6.4/liboctinterp.1.dylib . It appears the octave- control package is calling for the wrong one, since what was installed by octave is /opt/local/lib/octave/3.8.1/liboctinterp.2.dylib . I tried making an alias using symlinks but it didn't work. -- Ticket URL: <https://trac.macports.org/ticket/45003#comment:6> MacPorts <http://www.macports.org/> Ports system for OS X
#45003: Cannot install control package in Octave 3.8.1 on Mac OSX ------------------------------------+------------------------- Reporter: MacPorts@… | Owner: michaelld@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Resolution: | Keywords: Port: octave octave-control | ------------------------------------+------------------------- Changes (by mf2k@…): * cc: MacPorts@… (removed) * owner: macports-tickets@… => michaelld@… * port: octave, octave-control => octave octave-control Comment: In the future, please Cc the port maintainers ({{{port info --maintainers octave octave-control}}}). As reporter, you do not need to Cc yourself. -- Ticket URL: <https://trac.macports.org/ticket/45003#comment:7> MacPorts <http://www.macports.org/> Ports system for OS X
#45003: Cannot install control package in Octave 3.8.1 on Mac OSX ------------------------------------+------------------------- Reporter: MacPorts@… | Owner: michaelld@… Type: defect | Status: closed Priority: Normal | Milestone: Component: ports | Version: 2.3.1 Resolution: worksforme | Keywords: Port: octave octave-control | ------------------------------------+------------------------- Changes (by michaelld@…): * status: new => closed * resolution: => worksforme Comment: Please use MacPorts to install new stuff, not the build-in methods. Instead of issuing "pkg -forge install control" from within Octave, try "sudo port install octave-control" ... changes are the forge module exists in MacPorts; and, if MacPorts can install it it'll work better this way. If you need a new Octave module that MacPorts does not provide, try creating a new Portfile modeled after one of the existing octave-* modules. I just updated the octave-control package to 2.6.5 in revision [125649]. It installs cleanly for me as is on OSX 10.8, and I can then do: {{{ octave> pkg load control octave> pkg unload control }}} cleanly too. I think the issue here is not a failure of MacPorts or Octave itself; rather, it's knowing how to use the MacPorts package system to do installations. I'm closing this ticket as "works for me". If you feel otherwise, please reopen it and provide the log files for octave and octave-control that show otherwise. -- Ticket URL: <https://trac.macports.org/ticket/45003#comment:8> MacPorts <http://www.macports.org/> Ports system for OS X
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