Thanks for sharing Eliott, that seems to be a bug with Xcode and it should be affecting all 3rd party frameworks, not just MacRuby.
http://curi.us/1538-macruby-and-the-mac-app-store
Got my game in the app store. Hope these notes help others get things working too.
-- Elliot Temple
http://beginningofinfinity.com/
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