[107544] users/mojca

[mojca at macports.org]

Revision: 107544
          https://trac.macports.org/changeset/107544
Author:   mojca at macports.org
Date:     2013-07-02 12:26:33 -0700 (Tue, 02 Jul 2013)
Log Message:
-----------
add experimental port for Gate 6.2

Modified Paths:
--------------
    users/mojca/notes/Gate.txt

Added Paths:
-----------
    users/mojca/ports/science/gate/
    users/mojca/ports/science/gate/Portfile
    users/mojca/ports/science/gate/files/
    users/mojca/ports/science/gate/files/patch-compileerrors.diff

Modified: users/mojca/notes/Gate.txt
===================================================================
--- users/mojca/notes/Gate.txt	2013-07-02 18:47:08 UTC (rev 107543)
+++ users/mojca/notes/Gate.txt	2013-07-02 19:26:33 UTC (rev 107544)
@@ -12,3 +12,6 @@
 - http://suhard.fr/gate/
 - http://suhard.fr/gate/gate6.1.dmg
 - http://suhard.fr/gate/gate6.2.dmg
+
+TODO:
+- copy license/LICENSE.txt

Added: users/mojca/ports/science/gate/Portfile
===================================================================
--- users/mojca/ports/science/gate/Portfile	                        (rev 0)
+++ users/mojca/ports/science/gate/Portfile	2013-07-02 19:26:33 UTC (rev 107544)
@@ -0,0 +1,65 @@
+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id: $
+
+PortSystem          1.0
+PortGroup           cmake 1.0
+PortGroup           github 1.0
+
+# TODO: just temporary
+github.setup        mojca opengate 06d46c2
+
+name                gate
+version             6.2
+categories          science
+maintainers         mojca
+license             LGPL
+description         GATE description
+long_description    GATE is dedicated to numerical simulations in medical imaging and radiotherapy. \
+                    It currently supports simulations of Emission Tomography (PET and SPECT), \
+                    Computed Tomography (CT) and Radiotherapy experiments.
+homepage            http://www.opengatecollaboration.org
+platforms           darwin
+
+# distfiles           gate_v6_2_tar_gz_15843.gz
+# master_sites        http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/
+
+checksums           rmd160  0b03bd6273202e5dc6f4e443ebb92d1b2f7576b4 \
+                    sha256  5a73951f65d961723f167f3c30a1c5fbf0eb9ca29fb634710e76697f33348df4
+
+patchfiles          patch-compileerrors.diff
+
+worksrcdir          gate_v${version}
+configure.dir       ${workpath}/build
+build.dir           ${configure.dir}
+
+post-extract {
+    file mkdir ${configure.dir}
+}
+
+configure.post_args ${worksrcpath}
+
+depends_lib         port:geant4.9.6
+# clhep implied with geant4
+
+# depends_lib         port:clhep \
+#                     port:zlib
+
+# WITH_GEANT4_UIVIS=ON
+variant qt description {Build with Qt support} {
+    depends_lib-append  port:qt4-mac
+
+    # configure.args-append -DGEANT4_USE_QT=ON
+    # maybe we need more variables?
+}
+
+configure.args-append -DGATE_USE_OWN_CLHEP=OFF
+# configure.args-append -DGEANT4_INSTALL_DATA=ON \
+#                       -DGEANT4_BUILD_EXAMPLES=ON \
+#                       -DGEANT4_INSTALL_EXAMPLES=ON \
+#                       -DWITH_GEANT4_UIVIS=ON \
+#                       -DGEANT4_USE_OPENGL_X11=ON
+
+# TODO: this should come from Geant4 PortGroup
+configure.args-append -DGeant4_DIR=${prefix}/lib/Geant4/Geant4.9.6/Geant4-9.6.2
+
+default_variants +qt

Added: users/mojca/ports/science/gate/files/patch-compileerrors.diff
===================================================================
--- users/mojca/ports/science/gate/files/patch-compileerrors.diff	                        (rev 0)
+++ users/mojca/ports/science/gate/files/patch-compileerrors.diff	2013-07-02 19:26:33 UTC (rev 107544)
@@ -0,0 +1,40 @@
+--- source/general/include/GateUIcmdWithAVector.hh
++++ source/general/include/GateUIcmdWithAVector.hh
+@@ -118,14 +118,14 @@ template<typename vContentType>
+ G4String GateUIcmdWithAVector<vContentType>::ConvertToString
+ (std::vector<vContentType> vec)
+ {
+-  char st[100];
++  //char st[100];
+   //LF
+   //std::ostrstream os(st,100);
+-  std::ostringstream os(st,100);
++  std::ostringstream os;
+   //LF
+   for (G4int i=0; i<vec.size(); i++) os << vec[i] << " "; 
+   os << '\0';
+-  G4String vl = st;
++  G4String vl = os.str();
+   G4cout << "GateUIcmdWithAVector::ConvertToString : " << vl << G4endl;
+   return vl;
+ }
+--- source/physics/src/GateBinaryCascade.cc
++++ source/physics/src/GateBinaryCascade.cc
+@@ -2278,7 +2278,7 @@ G4Fragment * GateBinaryCascade::FindFragments()
+   }
+ 
+   G4int zCaptured = 0;
+-  G4LorentzVector CapturedMomentum=0;
++  G4LorentzVector CapturedMomentum(0);
+   for(i = theCapturedList.begin(); i != theCapturedList.end(); ++i)
+   {
+       CapturedMomentum += (*i)->Get4Momentum();
+@@ -2392,7 +2392,7 @@ G4LorentzVector GateBinaryCascade::GetFinalNucleusMomentum()
+ // return momentum of nucleus for use with precompound model; also keep transformation to
+ //   apply to precompoud products.
+ 
+-  G4LorentzVector CapturedMomentum=0;
++  G4LorentzVector CapturedMomentum(0);
+   G4KineticTrackVector::iterator i;
+ //  G4cout << "GetFinalNucleusMomentum Captured size: " <<theCapturedList.size() << G4endl;
+   for(i = theCapturedList.begin(); i != theCapturedList.end(); ++i)
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.macosforge.org/pipermail/macports-changes/attachments/20130702/92b26554/attachment.html>