[133487] trunk/dports/science/samtools/Portfile

[ryandesign at macports.org]

Revision: 133487
          https://trac.macports.org/changeset/133487
Author:   ryandesign at macports.org
Date:     2015-03-02 21:20:58 -0800 (Mon, 02 Mar 2015)
Log Message:
-----------
samtools: update to 1.2 (#46883)

Modified Paths:
--------------
    trunk/dports/science/samtools/Portfile

Modified: trunk/dports/science/samtools/Portfile
===================================================================
--- trunk/dports/science/samtools/Portfile	2015-03-03 03:30:36 UTC (rev 133486)
+++ trunk/dports/science/samtools/Portfile	2015-03-03 05:20:58 UTC (rev 133487)
@@ -2,9 +2,9 @@
 # $Id$
 
 PortSystem              1.0
+PortGroup               github 1.0
 
-name                    samtools
-version                 0.1.19
+github.setup            samtools samtools 1.2
 categories              science
 platforms               darwin
 maintainers             gmail.com:haroldpimentel openmaintainer
@@ -17,31 +17,30 @@
                         format, including sorting, merging, indexing and \
                         generating alignments in a per-position format.
 
-homepage                http://samtools.sourceforge.net/
-master_sites            sourceforge:project/samtools/samtools/${version}
+checksums               rmd160  536dcdc1c7730bc4a93f68e39967890331211c24 \
+                        sha256  420e7a4a107fe37619b9d300b6379452eb8eb04a4a9b65c3ec69de82ccc26daa
 
-checksums               rmd160  4e74858d3762f785452d1c9507bd127de9791894 \
-                        sha256  d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4
-
+homepage                http://www.htslib.org/
+github.tarball_from     releases
 use_bzip2               yes
 
 depends_lib             port:zlib port:ncurses
 
 use_configure           no
 
-configure.cflags-append -std=gnu89
+variant universal {}
 
-build.args              CC=${configure.cc} \
-                        CFLAGS="-g -Wall ${configure.cflags} ${configure.cc_archflags}"
+build.args              CC="${configure.cc} [get_canonical_archflags cc]"
 
 destroot {
     xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin
     xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib
+    xinstall -m 644 ${worksrcpath}/samtools.1 ${destroot}${prefix}/share/man/man1
     xinstall -d ${destroot}${prefix}/include/bam
     eval xinstall -m 644 [glob ${worksrcpath}/*.h] ${destroot}${prefix}/include/bam
     
     xinstall -d ${destroot}${prefix}/share/doc/${name}
     xinstall -m 644 -W ${worksrcpath} \
-        AUTHORS COPYING NEWS \
+        AUTHORS LICENSE NEWS README \
         ${destroot}${prefix}/share/doc/${name}
 }
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.macosforge.org/pipermail/macports-changes/attachments/20150302/5c50180e/attachment-0001.html>