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<title>[115738] trunk/dports/science/bedtools/Portfile</title>
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<dt>Revision</dt> <dd><a href="https://trac.macports.org/changeset/115738">115738</a></dd>
<dt>Author</dt> <dd>larryv@macports.org</dd>
<dt>Date</dt> <dd>2014-01-09 22:06:23 -0800 (Thu, 09 Jan 2014)</dd>
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<h3>Log Message</h3>
<pre>bedtools: Update to 2.18.1, install HTML docs (maintainer, #41956).

Also switch to github-1.0 PortGroup.</pre>

<h3>Modified Paths</h3>
<ul>
<li><a href="#trunkdportssciencebedtoolsPortfile">trunk/dports/science/bedtools/Portfile</a></li>
</ul>

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<div id="patch">
<h3>Diff</h3>
<a id="trunkdportssciencebedtoolsPortfile"></a>
<div class="modfile"><h4>Modified: trunk/dports/science/bedtools/Portfile (115737 => 115738)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/bedtools/Portfile        2014-01-10 05:32:39 UTC (rev 115737)
+++ trunk/dports/science/bedtools/Portfile        2014-01-10 06:06:23 UTC (rev 115738)
</span><span class="lines">@@ -2,10 +2,10 @@
</span><span class="cx"> # $Id$
</span><span class="cx"> 
</span><span class="cx"> PortSystem          1.0
</span><ins>+PortGroup           github 1.0
+github.setup        arq5x bedtools2 2.18.1 v
</ins><span class="cx"> 
</span><span class="cx"> name                bedtools
</span><del>-version             2.17.0
-revision            1
</del><span class="cx"> categories          science
</span><span class="cx"> platforms           darwin
</span><span class="cx"> maintainers         gmail.com:vandervelde.ag openmaintainer
</span><span class="lines">@@ -18,15 +18,10 @@
</span><span class="cx">                     The utilities are largely based on four widely-used file formats: \
</span><span class="cx">                     BED, GFF/GTF, VCF, and SAM/BAM.
</span><span class="cx"> 
</span><del>-homepage            https://code.google.com/p/bedtools/
-master_sites        googlecode
-distname            BEDTools.v${version}
-worksrcdir          ${name}-${version}
</del><ins>+checksums           sha1    9aae2e52c4d51e07e7127a97960fd7e60ac06cd8 \
+                    rmd160  b54d232c461a47c2a4554696b5006619b459d0c4 \
+                    sha256  04e447e84d57a4d1b92f01ebdd957df1a260214bf78362c39932f76a0e492fca
</ins><span class="cx"> 
</span><del>-checksums           sha1    1b1de3c35394a423f9ad98a9957a8853b426a578 \
-                    rmd160  dccc7dc02dd0519977e30f83a0d49c9f9b0e0ca9 \
-                    sha256  6dcfacdcbccc968e872b81ba1f37a086b1bcc486571582ed595db717e924d0fe
-
</del><span class="cx"> depends_build       port:py27-sphinx
</span><span class="cx"> 
</span><span class="cx"> depends_lib         port:zlib
</span><span class="lines">@@ -35,13 +30,15 @@
</span><span class="cx"> 
</span><span class="cx"> variant universal {}
</span><span class="cx"> 
</span><del>-configure.cflags-append -std=gnu89
-build.args          CC=${configure.cc} \
-                    CFLAGS=&quot;-g -Wall ${configure.cflags} [get_canonical_archflags cc]&quot;
</del><ins>+configure.optflags  -O2
+configure.cxxflags-append -Wall -D_FILE_OFFSET_BITS=64 -fPIC
+build.args          CXX=${configure.cxx} \
+                    CXXFLAGS=&quot;${configure.cxxflags} [get_canonical_archflags cxx]&quot;
+
</ins><span class="cx"> use_parallel_build  no
</span><span class="cx"> 
</span><span class="cx"> post-build {
</span><del>-    system -W ${worksrcpath}/docs &quot;make SPHINXBUILD=${prefix}/bin/sphinx-build-2.7 man&quot;
</del><ins>+    system -W ${worksrcpath}/docs &quot;${build.cmd} SPHINXBUILD=${prefix}/bin/sphinx-build-2.7 html man&quot;
</ins><span class="cx"> }
</span><span class="cx"> 
</span><span class="cx"> destroot {
</span><span class="lines">@@ -52,5 +49,6 @@
</span><span class="cx">         LICENSE README.rst RELEASE_HISTORY \
</span><span class="cx">         ${destroot}${prefix}/share/doc/${name}
</span><span class="cx">     eval xinstall -m 644 [glob ${worksrcpath}/genomes/*] ${destroot}${prefix}/share/${name}/genomes/
</span><ins>+    copy ${worksrcpath}/docs/_build/html ${destroot}${prefix}/share/doc/${name}/html
</ins><span class="cx">     xinstall -m 644 ${worksrcpath}/docs/_build/man/bedtools.1 ${destroot}${prefix}/share/man/man1
</span><span class="cx"> }
</span></span></pre>
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