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<title>[120009] trunk/dports/science</title>
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<dt>Revision</dt> <dd><a href="https://trac.macports.org/changeset/120009">120009</a></dd>
<dt>Author</dt> <dd>mojca@macports.org</dd>
<dt>Date</dt> <dd>2014-05-12 18:22:47 -0700 (Mon, 12 May 2014)</dd>
</dl>
<h3>Log Message</h3>
<pre>gate: new port (closes #35992)</pre>
<h3>Added Paths</h3>
<ul>
<li>trunk/dports/science/gate/</li>
<li><a href="#trunkdportssciencegatePortfile">trunk/dports/science/gate/Portfile</a></li>
<li><a href="#trunkdportssciencegatefilespatchaddmenudiff">trunk/dports/science/gate/files/patch-addmenu.diff</a></li>
</ul>
<h3>Removed Paths</h3>
<ul>
<li><a href="#trunkdportssciencegatePortfile">trunk/dports/science/gate/Portfile</a></li>
<li><a href="#trunkdportssciencegatefilespatchaddmenudiff">trunk/dports/science/gate/files/patch-addmenu.diff</a></li>
</ul>
</div>
<div id="patch">
<h3>Diff</h3>
<a id="trunkdportssciencegatePortfile"></a>
<div class="delfile"><h4>Deleted: trunk/dports/science/gate/Portfile (119919 => 120009)</h4>
<pre class="diff"><span>
<span class="info">--- users/mojca/ports/science/gate/Portfile 2014-05-10 03:15:11 UTC (rev 119919)
+++ trunk/dports/science/gate/Portfile 2014-05-13 01:22:47 UTC (rev 120009)
</span><span class="lines">@@ -1,184 +0,0 @@
</span><del>-# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
-# $Id$
-
-# Keep in sync with Geant4 (and/or implement a PortGroup)
-
-PortSystem 1.0
-PortGroup app 1.0
-PortGroup cmake 1.0
-PortGroup active_variants 1.1
-
-set git_sha e86c0082fe
-set git_date 20140317
-
-# TODO: temporary - if checksums are desired
-PortGroup github 1.0
-github.setup mojca gate ${git_sha}
-
-## official repository
-# fetch.type git
-# git.url http://git.opengatecollaboration.org/git/opengate-public.git
-# git.branch e86c0082fe617d1cad13ac3d35ae759bcf4e27f4
-
-name gate
-version 6.99-git-${git_date}-${git_sha}
-categories science
-maintainers mojca
-license LGPL
-description GATE description
-long_description GATE is dedicated to numerical simulations in medical imaging and radiotherapy. \
- It currently supports simulations of Emission Tomography (PET and SPECT), \
- Computed Tomography (CT) and Radiotherapy experiments.
-homepage http://www.opengatecollaboration.org
-platforms darwin
-
-checksums rmd160 4211aa4db0f2ab44934535848397dd932c6d14d8 \
- sha256 4235aab2d341cb6361ae7502e9429e03d6f0aa43cd478c5f49836b8d373f06c1
-
-set geant.data_versions_10.0 {
- G4NDL 4.4 G4NDL G4NEUTRONHPDATA
- G4EMLOW 6.35 G4EMLOW G4LEDATA
- PhotonEvaporation 3.0 G4PhotonEvaporation G4LEVELGAMMADATA
- RadioactiveDecay 4.0 G4RadioactiveDecay G4RADIOACTIVEDATA
- G4NEUTRONXS 1.4 G4NEUTRONXS G4NEUTRONXSDATA
- G4PII 1.3 G4PII G4PIIDATA
- RealSurface 1.0 RealSurface G4REALSURFACEDATA
- G4SAIDDATA 1.1 G4SAIDDATA G4SAIDXSDATA
- G4ABLA 3.0 G4ABLA G4ABLADATA
- G4ENSDFSTATE 1.0 G4ENSDFSTATE G4ENSDFSTATEDATA
-}
-set geant.data_versions_9.6 {
- G4NDL 4.2 G4NDL G4NEUTRONHPDATA
- G4EMLOW 6.32 G4EMLOW G4LEDATA
- PhotonEvaporation 2.3 G4PhotonEvaporation G4LEVELGAMMADATA
- RadioactiveDecay 3.6 G4RadioactiveDecay G4RADIOACTIVEDATA
- G4NEUTRONXS 1.2 G4NEUTRONXS G4NEUTRONXSDATA
- G4PII 1.3 G4PII G4PIIDATA
- RealSurface 1.0 RealSurface G4REALSURFACEDATA
- G4SAIDDATA 1.1 G4SAIDDATA G4SAIDXSDATA
-}
-set geant.data_versions_9.5 {
- G4NDL 4.0 G4NDL G4NEUTRONHPDATA
- G4EMLOW 6.32 G4EMLOW G4LEDATA
- PhotonEvaporation 2.2 G4PhotonEvaporation G4LEVELGAMMADATA
- RadioactiveDecay 3.4 G4RadioactiveDecay G4RADIOACTIVEDATA
- G4ABLA 3.0 G4ABLA G4ABLADATA
- G4NEUTRONXS 1.1 G4NEUTRONXS G4NEUTRONXSDATA
- G4PII 1.3 G4PII G4PIIDATA
- RealSurface 1.0 RealSurface G4REALSURFACEDATA
-}
-set geant.datadir ""
-set geant.data_versions ""
-
-app.name Gate
-app.executable Gate
-app.icon ${filespath}/gate.png
-
-configure.dir ${workpath}/build
-build.dir ${configure.dir}
-
-post-extract {
- file mkdir ${configure.dir}
-}
-configure.post_args ${worksrcpath}
-
-depends_lib port:clhep \
- port:qt4-mac \
- port:root
-
-# Geant4.9.5 probably doesn't support icon bars
-if {![variant_isset geant495]} {
- patchfiles patch-addmenu.diff
-}
-
-post-patch {
- # patch examples if needed
- if {[variant_isset examples]} {
- foreach f [exec find "${worksrcpath}/examples" -type f -name "*.mac"] {
- # gpumacros/ct/mac/visu.mac gpumacros/optical/macro_biolum_cpu.mac gpumacros/optical/macro_biolum_gpu.mac gpumacros/pet/mac/visu.mac gpumacros/photradthera/mac/visu.mac example_CT/classic/visu.mac example_CT/fast/visu.mac example_CT/vrt/visu.mac example_OPTICAL/macro/Visualisation.mac example_PET/PET_CylindricalPET_System.mac example_PET/PET_Ecat_System.mac example_PHANTOM_SOURCE/Voxelized_Phantom_Source/mainMacro.mac example_SPECT/vis.mac example_TimeActivityCurve/vis.mac example_TrackerDetector/visu.mac
- # replace "/vis/open OGLIX" with "/vis/open OGLIQt" (not sure about the difference between OGLIQt and OGLSQt; maybe even just OGL)
- # just in case we could check that the statement actually starts with /vis/open
- reinplace "s|OGLIX|OGLIQt|g" ${f}
- reinplace "s|OGLSX|OGLSQt|g" ${f}
- # TODO: create a single expression to cover both, possibly storing the variables to simplify the replacement part
- reinplace "s|/gate/geometry/setMaterialDatabase.*GateMaterials.db|/gate/geometry/setMaterialDatabase GateMaterials.db|g" ${f}
- reinplace "s|/gate/geometry/setMaterialDatabase.*GateMaterialsGPU.db|/gate/geometry/setMaterialDatabase GateMaterialsGPU.db|g" ${f}
- }
- }
-}
-pre-destroot {
- set destdocdir ${destroot}${prefix}/share/doc/${name}
- xinstall -m 755 -d ${destdocdir}
- # copy license
- copy ${worksrcpath}/license ${destdocdir}
- # copy examples
- if {[variant_isset examples]} {
- copy ${worksrcpath}/examples ${destdocdir}
- }
- # copy materials database
- set sharedir ${prefix}/share/${name}
- set destsharedir ${destroot}${sharedir}
- xinstall -m 755 -d ${destsharedir}
- copy ${worksrcpath}/GateMaterials.db ${destsharedir}
- copy ${worksrcpath}/GateMaterialsGPU.db ${destsharedir}
- # copy the initial macro files with basic setup
- copy ${filespath}/gui.mac ${destsharedir}
- copy ${filespath}/icons.mac ${destsharedir}
-}
-
-post-destroot {
- # TODO: the share folder is already set in another phase and should not repeat (actually, all the pre-destroot actions could go to post-destroot)
- set sharedir ${prefix}/share/${name}
- # move the binary and set environmental variables
- set destexecutable ${destroot}${prefix}/bin/Gate
- set libexecdir ${prefix}/libexec/${name}
- set destlibexecdir ${destroot}${libexecdir}
- xinstall -m 755 -d ${destlibexecdir}
- move ${destexecutable} ${destlibexecdir}
- system "echo '#!/bin/bash' > ${destexecutable}"
- system "echo export GATEHOME=\\\"${sharedir}\\\" >> ${destexecutable}"
- system "echo export G4DATADIR=\\\"${geant.datadir}\\\" >> ${destexecutable}"
- foreach {data.name data.version data.filename data.envvariable} ${geant.data_versions} {
- system "echo export ${data.envvariable}=\\\"\\\$G4DATADIR/${data.name}${data.version}\\\" >> ${destexecutable}"
- }
- system "echo ${libexecdir}/Gate \\\$@ >> ${destexecutable}"
- system "chmod 755 ${destexecutable}"
-}
-
-variant examples description {Install examples to doc} {
-}
-variant geant495 conflicts geant496 geant4100 description {Use Geant4 9.5} {
- # TODO: this can probably be done in a more elegant way
- # how to copy datadir and cmakedir from geant4 without duplication?
- set geant.data_versions ${geant.data_versions_9.5}
- set geant.datadir ${prefix}/share/Geant4/Data/Geant4.9.5
- set geant.cmakedir ${prefix}/lib/Geant4-9.5.2
-
- depends_lib-append port:geant4.9.5
- require_active_variants geant4.9.5 qt
- configure.args-append -DGeant4_DIR=${geant.cmakedir}
-}
-variant geant496 conflicts geant495 geant4100 description {Use Geant4 9.6} {
- set geant.data_versions ${geant.data_versions_9.6}
- set geant.datadir ${prefix}/share/Geant4/Data/Geant4.9.6
- set geant.cmakedir ${prefix}/lib/Geant4-9.6.2
-
- depends_lib-append port:geant4.9.6
- require_active_variants geant4.9.6 qt
- configure.args-append -DGeant4_DIR=${geant.cmakedir}
-}
-variant geant4100 conflicts geant495 geant496 description {Use Geant4 10.0 (doesn't work yet)} {
- set geant.data_versions ${geant.data_versions_10.0}
- set geant.datadir ${prefix}/share/Geant4/Data/Geant4.10.0
- set geant.cmakedir ${prefix}/lib/Geant4-10.0.0
-
- depends_lib-append port:geant4.10.0
- require_active_variants geant4.10.0 qt
- configure.args-append -DGeant4_DIR=${geant.cmakedir}
-}
-
-if {![variant_isset geant495] && ![variant_isset geant496] && ![variant_isset geant4100]} {
- default_variants +geant496
-}
-
-configure.args-append -DGATE_USE_SYSTEM_CLHEP=ON
</del></span></pre></div>
<a id="trunkdportssciencegatePortfilefromrev120008usersmojcaportssciencegatePortfile"></a>
<div class="copfile"><h4>Copied: trunk/dports/science/gate/Portfile (from rev 120008, users/mojca/ports/science/gate/Portfile) (0 => 120009)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/gate/Portfile (rev 0)
+++ trunk/dports/science/gate/Portfile 2014-05-13 01:22:47 UTC (rev 120009)
</span><span class="lines">@@ -0,0 +1,186 @@
</span><ins>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+# Keep in sync with Geant4 (and/or implement a PortGroup)
+
+PortSystem 1.0
+PortGroup app 1.0
+PortGroup cmake 1.0
+PortGroup active_variants 1.1
+
+set git_sha f97fe6c0a0
+set git_date 20140507
+
+# Using GitHub just for the sake of downloadable zips
+PortGroup github 1.0
+github.setup OpenGATE gate ${git_sha}
+version 7.0
+# version 7.0-git-${git_date}-${git_sha}
+
+## official repository
+# fetch.type git
+# git.url http://git.opengatecollaboration.org/git/opengate-public.git
+# git.branch <sha>
+
+categories science
+maintainers mojca openmaintainer
+license LGPL
+description GATE description
+long_description GATE is dedicated to numerical simulations in medical imaging and radiotherapy. \
+ It currently supports simulations of Emission Tomography (PET and SPECT), \
+ Computed Tomography (CT) and Radiotherapy experiments.
+homepage http://www.opengatecollaboration.org
+platforms darwin
+
+checksums rmd160 01e29ed24c6eebaad73ff4a74afc481e618804ff \
+ sha256 ca1cdac09686407fb3890c3ae162772409d8527a3c46b9997dc2edf91a86f270
+
+set geant.data_versions_10.0 {
+ G4NDL 4.4 G4NDL G4NEUTRONHPDATA
+ G4EMLOW 6.35 G4EMLOW G4LEDATA
+ PhotonEvaporation 3.0 G4PhotonEvaporation G4LEVELGAMMADATA
+ RadioactiveDecay 4.0 G4RadioactiveDecay G4RADIOACTIVEDATA
+ G4NEUTRONXS 1.4 G4NEUTRONXS G4NEUTRONXSDATA
+ G4PII 1.3 G4PII G4PIIDATA
+ RealSurface 1.0 RealSurface G4REALSURFACEDATA
+ G4SAIDDATA 1.1 G4SAIDDATA G4SAIDXSDATA
+ G4ABLA 3.0 G4ABLA G4ABLADATA
+ G4ENSDFSTATE 1.0 G4ENSDFSTATE G4ENSDFSTATEDATA
+}
+set geant.data_versions_9.6 {
+ G4NDL 4.2 G4NDL G4NEUTRONHPDATA
+ G4EMLOW 6.32 G4EMLOW G4LEDATA
+ PhotonEvaporation 2.3 G4PhotonEvaporation G4LEVELGAMMADATA
+ RadioactiveDecay 3.6 G4RadioactiveDecay G4RADIOACTIVEDATA
+ G4NEUTRONXS 1.2 G4NEUTRONXS G4NEUTRONXSDATA
+ G4PII 1.3 G4PII G4PIIDATA
+ RealSurface 1.0 RealSurface G4REALSURFACEDATA
+ G4SAIDDATA 1.1 G4SAIDDATA G4SAIDXSDATA
+}
+set geant.data_versions_9.5 {
+ G4NDL 4.0 G4NDL G4NEUTRONHPDATA
+ G4EMLOW 6.32 G4EMLOW G4LEDATA
+ PhotonEvaporation 2.2 G4PhotonEvaporation G4LEVELGAMMADATA
+ RadioactiveDecay 3.4 G4RadioactiveDecay G4RADIOACTIVEDATA
+ G4ABLA 3.0 G4ABLA G4ABLADATA
+ G4NEUTRONXS 1.1 G4NEUTRONXS G4NEUTRONXSDATA
+ G4PII 1.3 G4PII G4PIIDATA
+ RealSurface 1.0 RealSurface G4REALSURFACEDATA
+}
+set geant.datadir ""
+set geant.data_versions ""
+
+app.name Gate
+app.executable Gate
+app.icon ${filespath}/gate.png
+
+configure.dir ${workpath}/build
+build.dir ${configure.dir}
+
+post-extract {
+ file mkdir ${configure.dir}
+}
+configure.post_args ${worksrcpath}
+
+depends_lib port:qt4-mac \
+ port:root5
+
+# Geant4.9.5 probably doesn't support icon bars
+if {![variant_isset geant495]} {
+ patchfiles patch-addmenu.diff
+}
+
+configure.args-append \
+ -DGATE_USE_SYSTEM_CLHEP=OFF \
+ -DROOT_CONFIG_EXECUTABLE=${prefix}/libexec/root5/bin/root-config
+ # ROOT is optional: we could make a variant if needed
+
+post-patch {
+ # patch examples if needed
+ if {[variant_isset examples]} {
+ foreach f [exec find "${worksrcpath}/examples" -type f -name "*.mac"] {
+ # gpumacros/ct/mac/visu.mac gpumacros/optical/macro_biolum_cpu.mac gpumacros/optical/macro_biolum_gpu.mac gpumacros/pet/mac/visu.mac gpumacros/photradthera/mac/visu.mac example_CT/classic/visu.mac example_CT/fast/visu.mac example_CT/vrt/visu.mac example_OPTICAL/macro/Visualisation.mac example_PET/PET_CylindricalPET_System.mac example_PET/PET_Ecat_System.mac example_PHANTOM_SOURCE/Voxelized_Phantom_Source/mainMacro.mac example_SPECT/vis.mac example_TimeActivityCurve/vis.mac example_TrackerDetector/visu.mac
+ # replace "/vis/open OGLIX" with "/vis/open OGLIQt" (not sure about the difference between OGLIQt and OGLSQt; maybe even just OGL)
+ # just in case we could check that the statement actually starts with /vis/open
+ reinplace "s|OGLIX|OGLIQt|g" ${f}
+ reinplace "s|OGLSX|OGLSQt|g" ${f}
+ # TODO: create a single expression to cover both, possibly storing the variables to simplify the replacement part
+ reinplace "s|/gate/geometry/setMaterialDatabase.*GateMaterials.db|/gate/geometry/setMaterialDatabase GateMaterials.db|g" ${f}
+ reinplace "s|/gate/geometry/setMaterialDatabase.*GateMaterialsGPU.db|/gate/geometry/setMaterialDatabase GateMaterialsGPU.db|g" ${f}
+ }
+ }
+}
+pre-destroot {
+ set destdocdir ${destroot}${prefix}/share/doc/${name}
+ xinstall -m 755 -d ${destdocdir}
+ # copy license
+ copy ${worksrcpath}/license ${destdocdir}
+ # copy examples
+ if {[variant_isset examples]} {
+ copy ${worksrcpath}/examples ${destdocdir}
+ }
+ # copy materials database
+ set sharedir ${prefix}/share/${name}
+ set destsharedir ${destroot}${sharedir}
+ xinstall -m 755 -d ${destsharedir}
+ copy ${worksrcpath}/GateMaterials.db ${destsharedir}
+ copy ${worksrcpath}/GateMaterialsGPU.db ${destsharedir}
+ # copy the initial macro files with basic setup
+ copy ${filespath}/gui.mac ${destsharedir}
+ copy ${filespath}/icons.mac ${destsharedir}
+}
+
+post-destroot {
+ # TODO: the share folder is already set in another phase and should not repeat (actually, all the pre-destroot actions could go to post-destroot)
+ set sharedir ${prefix}/share/${name}
+ # move the binary and set environmental variables
+ set destexecutable ${destroot}${prefix}/bin/Gate
+ set libexecdir ${prefix}/libexec/${name}
+ set destlibexecdir ${destroot}${libexecdir}
+ xinstall -m 755 -d ${destlibexecdir}
+ move ${destexecutable} ${destlibexecdir}
+ system "echo '#!/bin/bash' > ${destexecutable}"
+ system "echo export GATEHOME=\\\"${sharedir}\\\" >> ${destexecutable}"
+ system "echo export G4DATADIR=\\\"${geant.datadir}\\\" >> ${destexecutable}"
+ foreach {data.name data.version data.filename data.envvariable} ${geant.data_versions} {
+ system "echo export ${data.envvariable}=\\\"\\\$G4DATADIR/${data.name}${data.version}\\\" >> ${destexecutable}"
+ }
+ system "echo ${libexecdir}/Gate \\\$@ >> ${destexecutable}"
+ system "chmod 755 ${destexecutable}"
+}
+
+variant examples description {Install examples to doc} {
+}
+variant geant495 conflicts geant496 geant4100 description {Use Geant4 9.5 (deprecated)} {
+ # TODO: this can probably be done in a more elegant way
+ # how to copy datadir and cmakedir from geant4 without duplication?
+ set geant.data_versions ${geant.data_versions_9.5}
+ set geant.datadir ${prefix}/share/Geant4/Data/Geant4.9.5
+ set geant.cmakedir ${prefix}/lib/Geant4-9.5.2
+
+ depends_lib-append port:geant4.9.5
+ require_active_variants geant4.9.5 qt
+ configure.args-append -DGeant4_DIR=${geant.cmakedir}
+}
+variant geant496 conflicts geant495 geant4100 description {Use Geant4 9.6} {
+ set geant.data_versions ${geant.data_versions_9.6}
+ set geant.datadir ${prefix}/share/Geant4/Data/Geant4.9.6
+ set geant.cmakedir ${prefix}/lib/Geant4-9.6.2
+
+ depends_lib-append port:geant4.9.6
+ require_active_variants geant4.9.6 qt
+ configure.args-append -DGeant4_DIR=${geant.cmakedir}
+}
+variant geant4100 conflicts geant495 geant496 description {Use Geant4 10.0 (not yet officially supported)} {
+ set geant.data_versions ${geant.data_versions_10.0}
+ set geant.datadir ${prefix}/share/Geant4/Data/Geant4.10.0
+ set geant.cmakedir ${prefix}/lib/Geant4-10.0.0
+
+ depends_lib-append port:geant4.10.0
+ require_active_variants geant4.10.0 qt
+ configure.args-append -DGeant4_DIR=${geant.cmakedir}
+}
+
+if {![variant_isset geant495] && ![variant_isset geant496] && ![variant_isset geant4100]} {
+ default_variants +geant496
+}
</ins></span></pre></div>
<a id="trunkdportssciencegatefilespatchaddmenudiff"></a>
<div class="delfile"><h4>Deleted: trunk/dports/science/gate/files/patch-addmenu.diff (119919 => 120009)</h4>
<pre class="diff"><span>
<span class="info">--- users/mojca/ports/science/gate/files/patch-addmenu.diff 2014-05-10 03:15:11 UTC (rev 119919)
+++ trunk/dports/science/gate/files/patch-addmenu.diff 2014-05-13 01:22:47 UTC (rev 120009)
</span><span class="lines">@@ -1,10 +0,0 @@
</span><del>---- Gate.cc
-+++ Gate.cc
-@@ -377,6 +377,7 @@ int main( int argc, char* argv[] )
- else {
- if (ui) // Launching interactive mode // Qt
- {
-+ UImanager->ApplyCommand("/gate/control/execute gui.mac");
- ui->SessionStart();
- delete ui;
- }
</del></span></pre></div>
<a id="trunkdportssciencegatefilespatchaddmenudifffromrev120007usersmojcaportssciencegatefilespatchaddmenudiff"></a>
<div class="copfile"><h4>Copied: trunk/dports/science/gate/files/patch-addmenu.diff (from rev 120007, users/mojca/ports/science/gate/files/patch-addmenu.diff) (0 => 120009)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/gate/files/patch-addmenu.diff (rev 0)
+++ trunk/dports/science/gate/files/patch-addmenu.diff 2014-05-13 01:22:47 UTC (rev 120009)
</span><span class="lines">@@ -0,0 +1,10 @@
</span><ins>+--- Gate.cc.orig
++++ Gate.cc
+@@ -382,6 +382,7 @@ int main( int argc, char* argv[] )
+
+ if (ui) // Launching interactive mode // Qt
+ {
++ UImanager->ApplyCommand("/gate/control/execute gui.mac");
+ ui->SessionStart();
+ delete ui;
+ }
</ins></span></pre>
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