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<title>[121599] trunk/dports/science/gerbil</title>
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<dt>Revision</dt> <dd><a href="https://trac.macports.org/changeset/121599">121599</a></dd>
<dt>Author</dt> <dd>cal@macports.org</dd>
<dt>Date</dt> <dd>2014-07-01 12:20:58 -0700 (Tue, 01 Jul 2014)</dd>
</dl>
<h3>Log Message</h3>
<pre>gerbil: update to 1.0b, closes #43927</pre>
<h3>Modified Paths</h3>
<ul>
<li><a href="#trunkdportssciencegerbilPortfile">trunk/dports/science/gerbil/Portfile</a></li>
</ul>
<h3>Added Paths</h3>
<ul>
<li>trunk/dports/science/gerbil/files/</li>
<li><a href="#trunkdportssciencegerbilfilespatchgui__model__representationcppincludenecessaryheaderdiff">trunk/dports/science/gerbil/files/patch-gui__model__representation.cpp-include-necessary-header.diff</a></li>
<li><a href="#trunkdportssciencegerbilfilespatchlsb__lsbhreadercppmissingincludediff">trunk/dports/science/gerbil/files/patch-lsb__lsbhreader.cpp-missing-include.diff</a></li>
</ul>
</div>
<div id="patch">
<h3>Diff</h3>
<a id="trunkdportssciencegerbilPortfile"></a>
<div class="modfile"><h4>Modified: trunk/dports/science/gerbil/Portfile (121598 => 121599)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/gerbil/Portfile        2014-07-01 19:00:17 UTC (rev 121598)
+++ trunk/dports/science/gerbil/Portfile        2014-07-01 19:20:58 UTC (rev 121599)
</span><span class="lines">@@ -5,47 +5,45 @@
</span><span class="cx"> PortGroup cmake 1.0
</span><span class="cx">
</span><span class="cx"> name gerbil
</span><del>-version 0.4a
</del><ins>+version 1.0b
+checksums rmd160 5004777d0efb900968f5ca2e4f0545ccc67ac0f3 \
+ sha256 710fc8d7864d5385949a51d9dbd2259f4835449ec7de5b6200ad3d104cd9684f
+
</ins><span class="cx"> categories science
</span><del>-license GPL-3
</del><ins>+license GPL-3 LGPL-3
</ins><span class="cx"> maintainers cal openmaintainer
</span><span class="cx"> platforms darwin
</span><del>-description Gerbil is a visualization tool targeted at multispectral\
- and hyperspectral image data, and a toolbox of common\
- algorithms
</del><ins>+description Hyperspectral Image Visualization & Analysis Framework
+long_description \
+ Gerbil consists of a new, interactive visualization methods for \
+ multispectral and hyperspectral image data, and a toolbox of common and \
+ novel algorithms, e.g. for segmentation.
</ins><span class="cx">
</span><del>-long_description ${description}
</del><ins>+homepage http://gerbilvis.org/
+master_sites http://files.gerbilvis.org/dl/
</ins><span class="cx">
</span><del>-homepage http://gerbil.sourceforge.net/
-master_sites sourceforge:project/gerbil/gerbil
</del><ins>+distname ${distname}-src
</ins><span class="cx"> use_bzip2 yes
</span><span class="cx">
</span><del>-checksums rmd160 bacfe1fe4a6d11bce6eba279464c9b272b43d5b4 \
- sha256 bc41bf0ea805ff51be76b3e6c61a93029901fbd17ec458578657dd6e23553d18
</del><ins>+worksrcdir ${name}-${version}
</ins><span class="cx">
</span><del>-livecheck.regex "/${name}/${name}-(\[0-9\]+(\\.\[0-9\]+)*\[a-z\]?)\.tar"
</del><ins>+patchfiles \
+ patch-gui__model__representation.cpp-include-necessary-header.diff \
+ patch-lsb__lsbhreader.cpp-missing-include.diff
</ins><span class="cx">
</span><ins>+livecheck.type regex
+livecheck.url ${master_sites}
+livecheck.regex "[quotemeta ${name}]-(\\d+(\\.\\d+)*\[a-z]?)-src[quotemeta ${extract.suffix}]"
+
</ins><span class="cx"> depends_lib port:qt4-mac \
</span><span class="cx"> port:opencv \
</span><span class="cx"> port:boost \
</span><del>- port:python27
</del><ins>+ port:gdal \
+ port:tbb
</ins><span class="cx">
</span><del>-# opencv is not universal
-universal_variant no
-
-worksrcdir ${name}-0.4
-
</del><span class="cx"> configure.post_args -DOpenCV_DIR="${prefix}/lib/cmake" \
</span><span class="cx"> -DCMAKE_BUILD_TYPE=Release \
</span><del>- -DGerbil_Viewer=on \
- -DGerbil_Edge_Detect=on \
- -DVole_Seg_Graphs=on \
- -DVole_Shell=on \
- -DCMAKE_EXE_LINKER_FLAGS=\"-framework OpenGL\" \
</del><span class="cx"> -DBoost_DIR="${prefix}" \
</span><del>- -DPYTHON_EXECUTABLE="${prefix}/bin/python2.7" \
- -DPYTHON_INCLUDE_DIR="${prefix}/Library/Frameworks/Python.framework/Versions/2.7/Headers" \
- -DPYTHON_LIBRARY="${prefix}/lib/libpython2.7.dylib"
</del><span class="cx">
</span><span class="cx"> # the gerbil makefiles do not provide an install target
</span><span class="cx"> destroot {
</span><span class="lines">@@ -54,37 +52,11 @@
</span><span class="cx"> xinstall -m 755 "${worksrcpath}/bin/qgerbil" "${destroot}${prefix}/bin/"
</span><span class="cx">
</span><span class="cx"> # create directories for shared files
</span><del>- xinstall -d -m 755 "${destroot}${prefix}/share/${name}"
- xinstall -d -m 755 "${destroot}${prefix}/share/${name}/doc"
</del><ins>+ xinstall -d -m 755 "${destroot}${prefix}/share/doc/${name}"
</ins><span class="cx">
</span><span class="cx"> # install shared files
</span><del>- set sharefiles [list "AUTHORS" "COPYING" "README.txt" "doc/file_format.txt" "doc/introduction.txt" "doc/license.txt"]
</del><ins>+ set sharefiles [list "AUTHORS" "COPYING" "README.txt"]
</ins><span class="cx"> foreach file $sharefiles {
</span><del>- xinstall -m 644 "${worksrcpath}/${file}" "${destroot}${prefix}/share/${name}/${file}"
</del><ins>+ xinstall -m 644 "${worksrcpath}/${file}" "${destroot}${prefix}/share/doc/${name}/${file}"
</ins><span class="cx"> }
</span><span class="cx"> }
</span><del>-
-variant doc description {Generate and install gerbil documentation} {
- depends_build-append \
- port:doxygen \
- path:bin/dot:graphviz \
- bin:latex:texlive-latex \
- bin:makeindex:texlive-basic \
- bin:dvips:texlive-basic
-
- build.target-append \
- doc
-
- post-destroot {
- set basepath "${worksrcpath}/doc/html"
- fs-traverse docfile "${basepath}" {
- set docfilename [string range "${docfile}" [string length "${basepath}"] end]
- if {[file isdirectory "${docfile}"]} {
- xinstall -d -m 755 "${destroot}${prefix}/share/${name}/doc/html/${docfilename}"
- } else {
- xinstall -m 644 "${docfile}" "${destroot}${prefix}/share/${name}/doc/html/${docfilename}"
- }
- }
- }
-}
-
</del></span></pre></div>
<a id="trunkdportssciencegerbilfilespatchgui__model__representationcppincludenecessaryheaderdiff"></a>
<div class="addfile"><h4>Added: trunk/dports/science/gerbil/files/patch-gui__model__representation.cpp-include-necessary-header.diff (0 => 121599)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/gerbil/files/patch-gui__model__representation.cpp-include-necessary-header.diff         (rev 0)
+++ trunk/dports/science/gerbil/files/patch-gui__model__representation.cpp-include-necessary-header.diff        2014-07-01 19:20:58 UTC (rev 121599)
</span><span class="lines">@@ -0,0 +1,8 @@
</span><ins>+--- gui/model/representation.cpp.orig        2014-07-01 20:45:39.000000000 +0200
++++ gui/model/representation.cpp        2014-07-01 20:46:02.000000000 +0200
+@@ -1,4 +1,5 @@
+ #include "representation.h"
++#include <ostream>
+
+ std::ostream &operator<<(std::ostream& os, const representation::t& r)
+ {
</ins></span></pre></div>
<a id="trunkdportssciencegerbilfilespatchlsb__lsbhreadercppmissingincludediff"></a>
<div class="addfile"><h4>Added: trunk/dports/science/gerbil/files/patch-lsb__lsbhreader.cpp-missing-include.diff (0 => 121599)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/gerbil/files/patch-lsb__lsbhreader.cpp-missing-include.diff         (rev 0)
+++ trunk/dports/science/gerbil/files/patch-lsb__lsbhreader.cpp-missing-include.diff        2014-07-01 19:20:58 UTC (rev 121599)
</span><span class="lines">@@ -0,0 +1,9 @@
</span><ins>+--- lsh/lshreader.cpp.orig        2014-07-01 20:35:08.000000000 +0200
++++ lsh/lshreader.cpp        2014-07-01 20:36:15.000000000 +0200
+@@ -1,5 +1,6 @@
+ #include "lshreader.h"
+ #include <cmath>
++#include <cstdlib>
+ #include <algorithm>
+
+ LSHReader::LSHReader(const LSH& master)
</ins></span></pre>
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