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<dl class="meta">
<dt>Revision</dt> <dd><a href="https://trac.macports.org/changeset/125442">125442</a></dd>
<dt>Author</dt> <dd>stromnov@macports.org</dd>
<dt>Date</dt> <dd>2014-09-17 14:09:18 -0700 (Wed, 17 Sep 2014)</dd>
</dl>
<h3>Log Message</h3>
<pre>shogun-devel: new port</pre>
<h3>Added Paths</h3>
<ul>
<li>trunk/dports/math/shogun-devel/</li>
<li><a href="#trunkdportsmathshogundevelPortfile">trunk/dports/math/shogun-devel/Portfile</a></li>
<li>trunk/dports/math/shogun-devel/files/</li>
<li><a href="#trunkdportsmathshogundevelfilespatchCMakeListstxtdiff">trunk/dports/math/shogun-devel/files/patch-CMakeLists.txt.diff</a></li>
<li><a href="#trunkdportsmathshogundevelfilespatchcmake_FindSpinlockcmakediff">trunk/dports/math/shogun-devel/files/patch-cmake_FindSpinlock.cmake.diff</a></li>
<li><a href="#trunkdportsmathshogundevelfilespatchsrc_interfaces_python_modular_CMakeListstxtdiff">trunk/dports/math/shogun-devel/files/patch-src_interfaces_python_modular_CMakeLists.txt.diff</a></li>
<li><a href="#trunkdportsmathshogundevelfilespatchsrc_shogun_CMakeListstxtdiff">trunk/dports/math/shogun-devel/files/patch-src_shogun_CMakeLists.txt.diff</a></li>
<li><a href="#trunkdportsmathshogundevelfilespatchsrc_shogun_evaluation_ContingencyTableEvaluationcppdiff">trunk/dports/math/shogun-devel/files/patch-src_shogun_evaluation_ContingencyTableEvaluation.cpp.diff</a></li>
</ul>
</div>
<div id="patch">
<h3>Diff</h3>
<a id="trunkdportsmathshogundevelPortfile"></a>
<div class="addfile"><h4>Added: trunk/dports/math/shogun-devel/Portfile (0 => 125442)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/math/shogun-devel/Portfile (rev 0)
+++ trunk/dports/math/shogun-devel/Portfile 2014-09-17 21:09:18 UTC (rev 125442)
</span><span class="lines">@@ -0,0 +1,101 @@
</span><ins>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+PortSystem 1.0
+PortGroup cmake 1.0
+
+name shogun-devel
+version 3.2.0
+set branch [join [lrange [split ${version} .] 0 1] .]
+revision 0
+categories math science
+platforms darwin
+license GPL-3
+
+conflicts shogun
+
+maintainers stromnov openmaintainer
+
+description The machine learning toolbox's focus is on large scale \
+ kernel methods
+
+long_description ${description} and especially on Support Vector Machines \
+ (SVM). It provides a generic SVM object interfacing to \
+ several different SVM implementations, among them the \
+ state of the art OCAS, LibSVM, SVMLight, SVMLin and GPDT.
+
+homepage http://shogun-toolbox.org
+master_sites ${homepage}/archives/shogun/releases/${branch}/sources/
+
+use_bzip2 yes
+
+checksums rmd160 8a64fb98ee080feccdd49d295117ad162d59443a \
+ sha256 bc416b615ed90aef80c58a30546c5e2da779347bebb8742ecf11657073fc8f72
+
+worksrcdir ${worksrcdir}/../build
+patch.dir ${workpath}/${distname}
+
+universal_variant no
+
+pre-fetch {
+ if {${os.major} <= 12} {
+ return -code error "Shogun is only supported on Mavericks or above"
+ }
+}
+
+post-extract {
+ file mkdir ${worksrcpath}
+
+ # Fix permissions
+ fs-traverse item ${workpath}/${distname} {
+ if {[file isdirectory ${item}]} {
+ file attributes ${item} -permissions a+rx
+ } elseif {[file isfile ${item}]} {
+ file attributes ${item} -permissions a+r
+ }
+ }
+}
+
+patchfiles patch-CMakeLists.txt.diff \
+ patch-src_shogun_CMakeLists.txt.diff \
+ patch-cmake_FindSpinlock.cmake.diff \
+ patch-src_shogun_evaluation_ContingencyTableEvaluation.cpp.diff \
+ patch-src_interfaces_python_modular_CMakeLists.txt.diff
+
+configure.args-append \
+ ../${distname}/ \
+ -DENABLE_CCACHE=NO \
+ -DPythonModular=ON \
+ -DPYTHON_EXECUTABLE=${prefix}/bin/python2.7
+
+depends_build-append \
+ port:pkgconfig \
+ port:python27
+
+depends_lib-append port:hdf5 \
+ port:json-c \
+ port:libxml2 \
+ port:readline \
+ port:atlas \
+ port:arpack \
+ port:eigen3 \
+ port:lp_solve \
+ port:glpk \
+ port:lzo2 \
+ port:snappy \
+ port:gzip \
+ port:bzip2 \
+ port:xz \
+ port:protobuf-cpp
+
+variant python27 description {Build the Python 2.7 API} {
+ depends_lib-append port:swig-python \
+ port:python27 \
+ port:py27-numpy
+ configure.args-append \
+ -DPythonModular=ON
+}
+
+livecheck.type regex
+livecheck.url http://www.shogun-toolbox.org
+livecheck.regex {SHOGUN ([0-9.]+)}
</ins><span class="cx">Property changes on: trunk/dports/math/shogun-devel/Portfile
</span><span class="cx">___________________________________________________________________
</span></span></pre></div>
<a id="svnkeywords"></a>
<div class="addfile"><h4>Added: svn:keywords</h4></div>
<a id="svneolstyle"></a>
<div class="addfile"><h4>Added: svn:eol-style</h4></div>
<a id="trunkdportsmathshogundevelfilespatchCMakeListstxtdiff"></a>
<div class="addfile"><h4>Added: trunk/dports/math/shogun-devel/files/patch-CMakeLists.txt.diff (0 => 125442)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/math/shogun-devel/files/patch-CMakeLists.txt.diff (rev 0)
+++ trunk/dports/math/shogun-devel/files/patch-CMakeLists.txt.diff 2014-09-17 21:09:18 UTC (rev 125442)
</span><span class="lines">@@ -0,0 +1,11 @@
</span><ins>+--- CMakeLists.txt.orig 2014-09-17 20:41:31.000000000 +0400
++++ CMakeLists.txt 2014-09-17 20:41:46.000000000 +0400
+@@ -622,7 +622,7 @@
+ IF (EIGEN3_FOUND)
+ SET(HAVE_EIGEN3 1)
+ LIST(APPEND DEFINES HAVE_EIGEN3)
+- LIST(APPEND SYSTEM_INCLUDES ${EIGEN_INCLUDE_DIR})
++ LIST(APPEND SYSTEM_INCLUDES ${EIGEN3_INCLUDE_DIR})
+ ENDIF()
+ ENDIF()
+
</ins></span></pre></div>
<a id="trunkdportsmathshogundevelfilespatchcmake_FindSpinlockcmakediff"></a>
<div class="addfile"><h4>Added: trunk/dports/math/shogun-devel/files/patch-cmake_FindSpinlock.cmake.diff (0 => 125442)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/math/shogun-devel/files/patch-cmake_FindSpinlock.cmake.diff (rev 0)
+++ trunk/dports/math/shogun-devel/files/patch-cmake_FindSpinlock.cmake.diff 2014-09-17 21:09:18 UTC (rev 125442)
</span><span class="lines">@@ -0,0 +1,15 @@
</span><ins>+--- cmake/FindSpinlock.cmake.orig 2013-12-19 01:25:15.000000000 +0400
++++ cmake/FindSpinlock.cmake 2013-12-19 01:34:27.000000000 +0400
+@@ -1,10 +1,10 @@
+ IF (CMAKE_USE_PTHREADS_INIT)
+ SET(_bindir "${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}")
+ IF (DARWIN)
+- TRY_COMPILE(HAVE_SPINLOCK "${_bindir}" "${CMAKE_MODULE_PATH}/spinlock-test-darwin.cpp")
++ TRY_COMPILE(HAVE_SPINLOCK "${_bindir}" "${CMAKE_CURRENT_LIST_DIR}/spinlock-test-darwin.cpp")
+ ELSE ()
+ TRY_COMPILE(HAVE_SPINLOCK "${_bindir}"
+- "${CMAKE_MODULE_PATH}/spinlock-test.cpp"
++ "${CMAKE_CURRENT_LIST_DIR}/spinlock-test.cpp"
+ CMAKE_FLAGS "-DLINK_LIBRARIES:STRING=${CMAKE_THREAD_LIBS_INIT}"
+ )
+ ENDIF ()
</ins></span></pre></div>
<a id="trunkdportsmathshogundevelfilespatchsrc_interfaces_python_modular_CMakeListstxtdiff"></a>
<div class="addfile"><h4>Added: trunk/dports/math/shogun-devel/files/patch-src_interfaces_python_modular_CMakeLists.txt.diff (0 => 125442)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/math/shogun-devel/files/patch-src_interfaces_python_modular_CMakeLists.txt.diff (rev 0)
+++ trunk/dports/math/shogun-devel/files/patch-src_interfaces_python_modular_CMakeLists.txt.diff 2014-09-17 21:09:18 UTC (rev 125442)
</span><span class="lines">@@ -0,0 +1,20 @@
</span><ins>+--- src/interfaces/python_modular/CMakeLists.txt.orig 2014-09-17 23:06:19.000000000 +0400
++++ src/interfaces/python_modular/CMakeLists.txt 2014-09-17 23:09:05.000000000 +0400
+@@ -14,16 +14,7 @@
+ RESULT_VARIABLE PYTHON_CVPY_PROCESS
+ OUTPUT_VARIABLE PYTHON_STD_PACKAGES_PATH
+ OUTPUT_STRIP_TRAILING_WHITESPACE)
+- if("${PYTHON_STD_PACKAGES_PATH}" MATCHES "site-packages")
+- set(_PYTHON_PACKAGES_PATH "python${PYTHON_VERSION_MAJOR}.${PYTHON_VERSION_MINOR}/site-packages")
+- else() #debian based assumed, install to the dist-packages.
+- set(_PYTHON_PACKAGES_PATH "python${PYTHON_VERSION_MAJOR}.${PYTHON_VERSION_MINOR}/dist-packages")
+- endif()
+- if(EXISTS "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}/${PYTHON_PACKAGES_PATH}")
+- set(_PYTHON_PACKAGES_PATH "lib${LIB_SUFFIX}/${_PYTHON_PACKAGES_PATH}")
+- else()
+- set(_PYTHON_PACKAGES_PATH "lib/${_PYTHON_PACKAGES_PATH}")
+- endif()
++ set(_PYTHON_PACKAGES_PATH ${PYTHON_STD_PACKAGES_PATH})
+ elseif(CMAKE_HOST_WIN32)
+ get_filename_component(PYTHON_PATH "${PYTHON_EXECUTABLE}" PATH)
+ file(TO_CMAKE_PATH "${PYTHON_PATH}" PYTHON_PATH)
</ins></span></pre></div>
<a id="trunkdportsmathshogundevelfilespatchsrc_shogun_CMakeListstxtdiff"></a>
<div class="addfile"><h4>Added: trunk/dports/math/shogun-devel/files/patch-src_shogun_CMakeLists.txt.diff (0 => 125442)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/math/shogun-devel/files/patch-src_shogun_CMakeLists.txt.diff (rev 0)
+++ trunk/dports/math/shogun-devel/files/patch-src_shogun_CMakeLists.txt.diff 2014-09-17 21:09:18 UTC (rev 125442)
</span><span class="lines">@@ -0,0 +1,11 @@
</span><ins>+--- src/shogun/CMakeLists.txt.orig 2013-12-19 02:00:19.000000000 +0400
++++ src/shogun/CMakeLists.txt 2013-12-19 02:03:59.000000000 +0400
+@@ -16,7 +16,7 @@
+ -D DST=${CMAKE_CURRENT_SOURCE_DIR}/lib/versionstring.h
+ -D ROOT_DIR=${CMAKE_SOURCE_DIR}
+ -D PYTHON_EXECUTABLE=${PYTHON_EXECUTABLE}
+- -P ${CMAKE_MODULE_PATH}/version.cmake
++ -P ${PROJECT_SOURCE_DIR}/cmake/version.cmake
+ COMMENT "Generating version header"
+ )
+ add_dependencies(shogun version)
</ins></span></pre></div>
<a id="trunkdportsmathshogundevelfilespatchsrc_shogun_evaluation_ContingencyTableEvaluationcppdiff"></a>
<div class="addfile"><h4>Added: trunk/dports/math/shogun-devel/files/patch-src_shogun_evaluation_ContingencyTableEvaluation.cpp.diff (0 => 125442)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/math/shogun-devel/files/patch-src_shogun_evaluation_ContingencyTableEvaluation.cpp.diff (rev 0)
+++ trunk/dports/math/shogun-devel/files/patch-src_shogun_evaluation_ContingencyTableEvaluation.cpp.diff 2014-09-17 21:09:18 UTC (rev 125442)
</span><span class="lines">@@ -0,0 +1,11 @@
</span><ins>+--- src/shogun/evaluation/ContingencyTableEvaluation.cpp.orig 2014-09-17 22:47:57.000000000 +0400
++++ src/shogun/evaluation/ContingencyTableEvaluation.cpp 2014-09-17 22:48:08.000000000 +0400
+@@ -52,7 +52,7 @@
+ return 42;
+ }
+
+-inline EEvaluationDirection CContingencyTableEvaluation::get_evaluation_direction() const
++EEvaluationDirection CContingencyTableEvaluation::get_evaluation_direction() const
+ {
+ switch (m_type)
+ {
</ins></span></pre>
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