<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head><meta http-equiv="content-type" content="text/html; charset=utf-8" />
<title>[139542] trunk/dports/science/ghemical</title>
</head>
<body>
<style type="text/css"><!--
#msg dl.meta { border: 1px #006 solid; background: #369; padding: 6px; color: #fff; }
#msg dl.meta dt { float: left; width: 6em; font-weight: bold; }
#msg dt:after { content:':';}
#msg dl, #msg dt, #msg ul, #msg li, #header, #footer, #logmsg { font-family: verdana,arial,helvetica,sans-serif; font-size: 10pt; }
#msg dl a { font-weight: bold}
#msg dl a:link { color:#fc3; }
#msg dl a:active { color:#ff0; }
#msg dl a:visited { color:#cc6; }
h3 { font-family: verdana,arial,helvetica,sans-serif; font-size: 10pt; font-weight: bold; }
#msg pre { overflow: auto; background: #ffc; border: 1px #fa0 solid; padding: 6px; }
#logmsg { background: #ffc; border: 1px #fa0 solid; padding: 1em 1em 0 1em; }
#logmsg p, #logmsg pre, #logmsg blockquote { margin: 0 0 1em 0; }
#logmsg p, #logmsg li, #logmsg dt, #logmsg dd { line-height: 14pt; }
#logmsg h1, #logmsg h2, #logmsg h3, #logmsg h4, #logmsg h5, #logmsg h6 { margin: .5em 0; }
#logmsg h1:first-child, #logmsg h2:first-child, #logmsg h3:first-child, #logmsg h4:first-child, #logmsg h5:first-child, #logmsg h6:first-child { margin-top: 0; }
#logmsg ul, #logmsg ol { padding: 0; list-style-position: inside; margin: 0 0 0 1em; }
#logmsg ul { text-indent: -1em; padding-left: 1em; }#logmsg ol { text-indent: -1.5em; padding-left: 1.5em; }
#logmsg > ul, #logmsg > ol { margin: 0 0 1em 0; }
#logmsg pre { background: #eee; padding: 1em; }
#logmsg blockquote { border: 1px solid #fa0; border-left-width: 10px; padding: 1em 1em 0 1em; background: white;}
#logmsg dl { margin: 0; }
#logmsg dt { font-weight: bold; }
#logmsg dd { margin: 0; padding: 0 0 0.5em 0; }
#logmsg dd:before { content:'\00bb';}
#logmsg table { border-spacing: 0px; border-collapse: collapse; border-top: 4px solid #fa0; border-bottom: 1px solid #fa0; background: #fff; }
#logmsg table th { text-align: left; font-weight: normal; padding: 0.2em 0.5em; border-top: 1px dotted #fa0; }
#logmsg table td { text-align: right; border-top: 1px dotted #fa0; padding: 0.2em 0.5em; }
#logmsg table thead th { text-align: center; border-bottom: 1px solid #fa0; }
#logmsg table th.Corner { text-align: left; }
#logmsg hr { border: none 0; border-top: 2px dashed #fa0; height: 1px; }
#header, #footer { color: #fff; background: #636; border: 1px #300 solid; padding: 6px; }
#patch { width: 100%; }
#patch h4 {font-family: verdana,arial,helvetica,sans-serif;font-size:10pt;padding:8px;background:#369;color:#fff;margin:0;}
#patch .propset h4, #patch .binary h4 {margin:0;}
#patch pre {padding:0;line-height:1.2em;margin:0;}
#patch .diff {width:100%;background:#eee;padding: 0 0 10px 0;overflow:auto;}
#patch .propset .diff, #patch .binary .diff {padding:10px 0;}
#patch span {display:block;padding:0 10px;}
#patch .modfile, #patch .addfile, #patch .delfile, #patch .propset, #patch .binary, #patch .copfile {border:1px solid #ccc;margin:10px 0;}
#patch ins {background:#dfd;text-decoration:none;display:block;padding:0 10px;}
#patch del {background:#fdd;text-decoration:none;display:block;padding:0 10px;}
#patch .lines, .info {color:#888;background:#fff;}
--></style>
<div id="msg">
<dl class="meta">
<dt>Revision</dt> <dd><a href="https://trac.macports.org/changeset/139542">139542</a></dd>
<dt>Author</dt> <dd>devans@macports.org</dd>
<dt>Date</dt> <dd>2015-08-19 15:51:36 -0700 (Wed, 19 Aug 2015)</dd>
</dl>
<h3>Log Message</h3>
<pre>ghemical: update to version 3.0.0, dependencies, configuration, reconfigure using distributed autogen.sh for intltool 0.51 compatibility, reported clang build failure fixed using debian patch (#48630).</pre>
<h3>Modified Paths</h3>
<ul>
<li><a href="#trunkdportsscienceghemicalPortfile">trunk/dports/science/ghemical/Portfile</a></li>
</ul>
<h3>Added Paths</h3>
<ul>
<li>trunk/dports/science/ghemical/files/</li>
<li><a href="#trunkdportsscienceghemicalfilespatchautogenshdiff">trunk/dports/science/ghemical/files/patch-autogen.sh.diff</a></li>
<li><a href="#trunkdportsscienceghemicalfilespatchdebianbug756440diff">trunk/dports/science/ghemical/files/patch-debian-bug-756440.diff</a></li>
</ul>
</div>
<div id="patch">
<h3>Diff</h3>
<a id="trunkdportsscienceghemicalPortfile"></a>
<div class="modfile"><h4>Modified: trunk/dports/science/ghemical/Portfile (139541 => 139542)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/ghemical/Portfile        2015-08-19 22:43:30 UTC (rev 139541)
+++ trunk/dports/science/ghemical/Portfile        2015-08-19 22:51:36 UTC (rev 139542)
</span><span class="lines">@@ -1,3 +1,4 @@
</span><ins>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</ins><span class="cx"> # $Id$
</span><span class="cx">
</span><span class="cx"> PortSystem 1.0
</span><span class="lines">@@ -3,6 +4,6 @@
</span><span class="cx">
</span><span class="cx"> name ghemical
</span><del>-version 2.99.2
-set release_date 20090911
</del><ins>+version 3.0.0
+set release_date 20111012
</ins><span class="cx"> categories science
</span><span class="cx"> license GPL-2+
</span><span class="lines">@@ -24,11 +25,14 @@
</span><span class="cx"> homepage http://www.bioinformatics.org/ghemical/${name}/
</span><span class="cx"> master_sites http://www.bioinformatics.org/ghemical/download/release${release_date}/
</span><span class="cx">
</span><del>-checksums sha1 b84b3f750ccd05a9cc0b1a8318abb3a24f2be9c1 \
- rmd160 2d8a4d4f3d38c6b2e8b70d14f1b748c40c760334
</del><ins>+checksums rmd160 dc30bd1cd68a958297512f4b17c195200994d26a \
+ sha256 babb2bda93cf0c20f234452eeb7d19d1d8c0e4c4d611734f110f8de066a1bcb2
</ins><span class="cx">
</span><span class="cx"> depends_build port:pkgconfig \
</span><del>- port:intltool
</del><ins>+ port:intltool \
+ port:autoconf \
+ port:automake \
+ port:libtool
</ins><span class="cx">
</span><span class="cx"> depends_lib port:gtk2 \
</span><span class="cx"> port:libglade2 \
</span><span class="lines">@@ -37,10 +41,17 @@
</span><span class="cx"> port:libghemical \
</span><span class="cx"> port:liboglappth
</span><span class="cx">
</span><del>-configure.args --enable-gamess \
- --enable-shortcuts \
- --enable-openbabel
</del><ins>+# reconfigure using distributed autogen.sh for intltool 0.51 compatibility
</ins><span class="cx">
</span><ins>+patchfiles patch-autogen.sh.diff \
+ patch-debian-bug-756440.diff
+
+configure.cmd ./autogen.sh && ./configure
+
+configure.args --enable-gtk \
+ --enable-openbabel \
+ --disable-silent-rules
+
</ins><span class="cx"> platform darwin 9 {
</span><span class="cx"> configure.ldflags-append "-L${prefix}/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries"
</span><span class="cx"> }
</span></span></pre></div>
<a id="trunkdportsscienceghemicalfilespatchautogenshdiff"></a>
<div class="addfile"><h4>Added: trunk/dports/science/ghemical/files/patch-autogen.sh.diff (0 => 139542)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/ghemical/files/patch-autogen.sh.diff         (rev 0)
+++ trunk/dports/science/ghemical/files/patch-autogen.sh.diff        2015-08-19 22:51:36 UTC (rev 139542)
</span><span class="lines">@@ -0,0 +1,20 @@
</span><ins>+--- autogen.sh.orig        2015-08-19 14:53:23.000000000 -0700
++++ autogen.sh        2015-08-19 14:53:44.000000000 -0700
+@@ -6,7 +6,7 @@
+ intltoolize --force --copy
+
+ echo "Running libtoolize"
+-libtoolize --force --copy
++glibtoolize --force --copy
+
+ echo "Removing autom4te.cache"
+ rm -fr autom4te.cache
+@@ -35,7 +35,7 @@
+ ##export ACLOCAL=aclocal-1.4
+ ##export AUTOMAKE=automake-1.4
+
+-autoreconf -v -f
++autoreconf -v -f -i
+
+ echo "======================================"
+ echo "Now you are ready to run './configure'"
</ins></span></pre></div>
<a id="trunkdportsscienceghemicalfilespatchdebianbug756440diff"></a>
<div class="addfile"><h4>Added: trunk/dports/science/ghemical/files/patch-debian-bug-756440.diff (0 => 139542)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/science/ghemical/files/patch-debian-bug-756440.diff         (rev 0)
+++ trunk/dports/science/ghemical/files/patch-debian-bug-756440.diff        2015-08-19 22:51:36 UTC (rev 139542)
</span><span class="lines">@@ -0,0 +1,33 @@
</span><ins>+--- src/project.h        2011-09-14 21:10:38.000000000 +0400
++++ src/project.h        2014-07-30 01:09:50.224766049 +0400
+@@ -122,6 +122,14 @@
+         graphical user interface.
+ */
+
++class project;
++
++bool ReadGPR_OLD(project &, istream &, bool, bool = false);                ///< this is for the very old version.
++bool ReadGPR_v100(project &, istream &, bool, bool = false);                ///< this is for the version 1.00.
++bool ReadGPR_v110(project &, istream &, bool, bool = false);                ///< this is for the version 1.10.
++/// This is an input function for the v1.11 ghemical file format.
++bool ReadGPR(project &, istream &, bool, bool = false);
++
+ class project :
+         public custom_transformer_client,
+         public model
+@@ -207,11 +215,11 @@
+
+ // methods for file I/O : ReadGPR and WriteGPR are friend functions so that it would be easier to "borrow" them elsewhere...
+ // ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+-        friend bool ReadGPR_OLD(project &, istream &, bool, bool = false);                ///< this is for the very old version.
+-        friend bool ReadGPR_v100(project &, istream &, bool, bool = false);                ///< this is for the version 1.00.
+-        friend bool ReadGPR_v110(project &, istream &, bool, bool = false);                ///< this is for the version 1.10.
++        friend bool ReadGPR_OLD(project &, istream &, bool, bool);                ///< this is for the very old version.
++        friend bool ReadGPR_v100(project &, istream &, bool, bool);                ///< this is for the version 1.00.
++        friend bool ReadGPR_v110(project &, istream &, bool, bool);                ///< this is for the version 1.10.
+ /// This is an input function for the v1.11 ghemical file format.
+-        friend bool ReadGPR(project &, istream &, bool, bool = false);
++        friend bool ReadGPR(project &, istream &, bool, bool);
+         
+         friend void WriteGPR_v100(project &, ostream &);        ///< this is for the version 1.00.
+ /// This is an output function for the v1.11 ghemical file format.
</ins></span></pre>
</div>
</div>
</body>
</html>