problem with /usr/bin/llvm-gcc-4.2 while installing healpy

bhoyle benhoyle1212 at gmail.com
Mon Jun 10 03:42:36 PDT 2013


Dear all,

I'm having a hard time [for the last few days] trying to install healpy from
macports.  I've attached my log file. Would someone mind taking a look, and
telling me where I'm messing up?

Thanks.
//system
Mac Mountain Lion, macports is up to date

//my .profile has
export
PATH=/opt/local/bin:/opt/local/include/:/opt/local/sbin:/usr/bin/:/usr/local/mysql/bin:$PATH

// the output of my main.log file is:

version:1
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 502
:debug:main Executing org.macports.main (py27-healpy)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.archivefetch (py27-healpy)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.fetch (py27-healpy)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.checksum (py27-healpy)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.extract (py27-healpy)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.patch (py27-healpy)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.configure (py27-healpy)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:build build phase started at Mon Jun 10 12:37:37 CEST 2013
:notice:build --->  Building py27-healpy
:debug:build Executing proc-pre-org.macports.build-build-0
:debug:build Executing org.macports.build (py27-healpy)
:debug:build Environment: CPATH='/opt/local/include' CFLAGS='-arch x86_64'
CXXFLAGS='-arch x86_64' LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.8' CXX='/usr/bin/llvm-g++-4.2'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-healpy/py27-healpy/work/.CC_PRINT_OPTIONS'
F90FLAGS='-m64' LDFLAGS='-arch x86_64' FCFLAGS='-m64'
OBJC='/usr/bin/llvm-gcc-4.2' OBJCFLAGS='-arch x86_64' FFLAGS='-m64'
CC_PRINT_OPTIONS='YES' CC='/usr/bin/llvm-gcc-4.2'
:debug:build Assembled command: 'cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-healpy/py27-healpy/work/healpy-1.6.1"
&& /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
setup.py --no-user-cfg build'
:debug:build Executing command line:  cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-healpy/py27-healpy/work/healpy-1.6.1"
&& /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
setup.py --no-user-cfg build 
:info:build running build
:info:build running build_py
:info:build running build_clib
:info:build checking if configure script for library 'cfitsio' exists
:info:build checking if configure script for library 'healpix_cxx' exists
:info:build checking if library 'cfitsio' is installed
:info:build found 'cfitsio' installed, using it
:info:build checking if library 'healpix_cxx' is installed
:info:build found 'healpix_cxx' installed, using it
:info:build running build_ext
:info:build building 'healpy._query_disc' extension
:info:build /usr/bin/llvm-gcc-4.2 -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-prototypes -arch x86_64
-I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include
-I/opt/local/include -I/opt/local/include/healpix_cxx -I/opt/local/include
-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c healpy/src/_query_disc.c -o
build/temp.macosx-10.8-x86_64-2.7/healpy/src/_query_disc.o -fopenmp
:info:build i686-apple-darwin11-llvm-gcc-4.2: healpy/src/_query_disc.c: No
such file or directory
:info:build i686-apple-darwin11-llvm-gcc-4.2: no input files
:info:build error: command '/usr/bin/llvm-gcc-4.2' failed with exit status 1
:info:build Command failed:  cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-healpy/py27-healpy/work/healpy-1.6.1"
&& /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
setup.py --no-user-cfg build 
:info:build Exit code: 1
:error:build org.macports.build for port py27-healpy returned: command
execution failed
:debug:build Error code: CHILDSTATUS 4944 1
:debug:build Backtrace: command execution failed
    while executing
"system -nice 0 $fullcmdstring"
    ("eval" body line 1)
    invoked from within
"eval system $notty $nice \$fullcmdstring"
    invoked from within
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"$procedure $targetname"
:info:build Warning: targets not executed for py27-healpy:
org.macports.activate org.macports.build org.macports.destroot
org.macports.install
:error:build Failed to install py27-healpy
:debug:build couldn't open
"/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex":
no such file or directory
    while executing
"open [file join $dir tclIndex]"
:notice:build Please see the log file for port py27-healpy for details:
   
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-healpy/py27-healpy/main.log




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