[MacPorts] #43322: py-scipy @0.13.3_1: builds agains ATLAS (variant +atlas) Seg. fault during testing.

[MacPorts]

#43322: py-scipy @0.13.3_1: builds agains ATLAS (variant +atlas) Seg. fault during
testing.
-----------------------------+--------------------------------
 Reporter:  Peter.Danecek@…  |      Owner:  macports-tickets@…
     Type:  defect           |     Status:  new
 Priority:  Normal           |  Milestone:
Component:  ports            |    Version:
 Keywords:                   |       Port:  py-scipy atlas
-----------------------------+--------------------------------
 I built py-scipy against ATLAS. This version of scipy crashes during
 testing with a Segmentation fault. The details below are for `py27-scipy
 +atlas`, but it was observed before (version @0.13.3) with other python
 subports as well.

 There seem to be some //real failures// before the crash as well.

 {{{
 In [2]: import scipy

 In [3]: scipy.test()
 Running unit tests for scipy
 NumPy version 1.8.0
 NumPy is installed in
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/numpy
 SciPy version 0.13.3
 SciPy is installed in
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy
 Python version 2.7.6 (default, Nov 22 2013, 13:39:24) [GCC 4.2.1
 Compatible Apple Clang 4.1 ((tags/Apple/clang-421.11.66))]
 nose version 1.3.1
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/numpy/lib/utils.py:134: DeprecationWarning:
 `scipy.lib.blas` is deprecated, use `scipy.linalg.blas` instead!
   warnings.warn(depdoc, DeprecationWarning)
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/numpy/lib/utils.py:134: DeprecationWarning:
 `scipy.lib.lapack` is deprecated, use `scipy.linalg.lapack` instead!
   warnings.warn(depdoc, DeprecationWarning)
 ..............................................................................................................................................................................................................................K..................................................................................................................K.......................................................................................K..K...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F..FF......................................................................................................................................SSSSSS......SSSSSS......SSSS..............................FFF.....................................................0-th
 dimension must be fixed to 3 but got 15
 ..0-th dimension must be fixed to 3 but got 5
 ...F.Segmentation fault
 }}}

 ATLAS is installed as:
 {{{
 atlas @3.10.1_5+mpclang33 (active)
 }}}

 I also attach a crash report in the hope that it might help.

 Not sure if this could be due to compiler mismatch. I CC Vince as atlas
 maintainer as well.

-- 
Ticket URL: <https://trac.macports.org/ticket/43322>
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