[MacPorts] #45728: SuiteSparse @4.2.1_3+atlas: Undefined symbols _dgemm_ _dgemv_ _dger_ _dlarf_ _dlarfb_ _dlarfg_ _dlarft_ _dnrm2_ _dpotrf_ _dsyrk_ _dtrsm_ _dtrsv_ _dznrm2_ _zgemm_ _zgemv_ _zherk_ _zlarf_ _zlarfb_ _zlarfg_ _zlarft_ _zpotrf_ _ztrsm_ _ztrsv_ (was: SuiteSparse +atlas install failed during install octave +atlas +gui)

[MacPorts]

#45728: SuiteSparse @4.2.1_3+atlas: Undefined symbols _dgemm_ _dgemv_ _dger_
_dlarf_ _dlarfb_ _dlarfg_ _dlarft_ _dnrm2_ _dpotrf_ _dsyrk_ _dtrsm_ _dtrsv_
_dznrm2_ _zgemm_ _zgemv_ _zherk_ _zlarf_ _zlarfb_ _zlarfg_ _zlarft_
_zpotrf_ _ztrsm_ _ztrsv_
--------------------------+--------------------------------
  Reporter:  aarakes@…    |      Owner:  macports-tickets@…
      Type:  defect       |     Status:  closed
  Priority:  Normal       |  Milestone:
 Component:  ports        |    Version:  2.3.2
Resolution:  duplicate    |   Keywords:
      Port:  SuiteSparse  |
--------------------------+--------------------------------
Changes (by ryandesign@…):

 * status:  new => closed
 * cc: michaelld@… (added)
 * resolution:   => duplicate
 * port:  SuiteSparse 4.2.1 => SuiteSparse


Old description:

> OS 10.9.5
> Xcode 6.1
> Build version 6A1052d
>
> Here is where the error occurred from the log file.
>
> :info:destroot       _cholmod_super_lsolve in cholmod_super_solve.o
> :info:destroot       _cholmod_super_ltsolve in cholmod_super_solve.o
> :info:destroot   "_ztrsv_", referenced from:
> :info:destroot       _cholmod_l_super_lsolve in cholmod_l_super_solve.o
> :info:destroot       _cholmod_l_super_ltsolve in cholmod_l_super_solve.o
> :info:destroot       _cholmod_super_lsolve in cholmod_super_solve.o
> :info:destroot       _cholmod_super_ltsolve in cholmod_super_solve.o
> :info:destroot ld: symbol(s) not found for architecture x86_64
> :info:destroot clang: error: linker command failed with exit code 1 (use
> -v to see invocation)
> :info:destroot Command failed:  /usr/bin/clang++ -Wall -Os -arch x86_64
> -dynamiclib -Wl,-all_load -L/opt/local/lib -ltatlas
> ../../SuiteSparse_config/libsuitesparseconfig.4.2.1.dylib
> ../../AMD/Lib/libamd.2.4.0.dylib  ../../CAMD/Lib/libcamd.2.4.0.dylib
> ../../COLAMD/Lib/libcolamd.2.9.0.dylib
> ../../CCOLAMD/Lib/libccolamd.2.9.0.dylib  -o libcholmod.3.0.0.dylib
> -compatibility_version  3  -current_version 3.0.0  -install_name
> /opt/local/lib/libcholmod.3.0.0.dylib  *.o
> :info:destroot Exit code: 1
> :error:destroot org.macports.destroot for port SuiteSparse returned:
> command execution failed
> :debug:destroot Error code: NONE
> :debug:destroot Backtrace: command execution failed
>     while executing
> "proc-post-org.macports.destroot-destroot-0 org.macports.destroot"
>     ("eval" body line 1)
>     invoked from within
> "eval $post $targetname"
> :info:destroot Warning: targets not executed for SuiteSparse:
> org.macports.activate org.macports.destroot org.macports.install
> :error:destroot Failed to install SuiteSparse
> :debug:destroot Registry error: netpbm not registered as installed &
> active.
>     invoked from within
> "registry_active $subport"
>     invoked from within
> "$workername eval registry_active \$subport"
> :notice:destroot Please see the log file for port SuiteSparse for
> details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_SuiteSparse/SuiteSparse/main.log

New description:

 OS 10.9.5 [[br]]
 Xcode 6.1 [[br]]
 Build version 6A1052d

 Here is where the error occurred from the log file.

 {{{
 :info:destroot       _cholmod_super_lsolve in cholmod_super_solve.o
 :info:destroot       _cholmod_super_ltsolve in cholmod_super_solve.o
 :info:destroot   "_ztrsv_", referenced from:
 :info:destroot       _cholmod_l_super_lsolve in cholmod_l_super_solve.o
 :info:destroot       _cholmod_l_super_ltsolve in cholmod_l_super_solve.o
 :info:destroot       _cholmod_super_lsolve in cholmod_super_solve.o
 :info:destroot       _cholmod_super_ltsolve in cholmod_super_solve.o
 :info:destroot ld: symbol(s) not found for architecture x86_64
 :info:destroot clang: error: linker command failed with exit code 1 (use
 -v to see invocation)
 :info:destroot Command failed:  /usr/bin/clang++ -Wall -Os -arch x86_64
 -dynamiclib -Wl,-all_load -L/opt/local/lib -ltatlas
 ../../SuiteSparse_config/libsuitesparseconfig.4.2.1.dylib
 ../../AMD/Lib/libamd.2.4.0.dylib  ../../CAMD/Lib/libcamd.2.4.0.dylib
 ../../COLAMD/Lib/libcolamd.2.9.0.dylib
 ../../CCOLAMD/Lib/libccolamd.2.9.0.dylib  -o libcholmod.3.0.0.dylib
 -compatibility_version  3  -current_version 3.0.0  -install_name
 /opt/local/lib/libcholmod.3.0.0.dylib  *.o
 :info:destroot Exit code: 1
 :error:destroot org.macports.destroot for port SuiteSparse returned:
 command execution failed
 :debug:destroot Error code: NONE
 :debug:destroot Backtrace: command execution failed
     while executing
 "proc-post-org.macports.destroot-destroot-0 org.macports.destroot"
     ("eval" body line 1)
     invoked from within
 "eval $post $targetname"
 :info:destroot Warning: targets not executed for SuiteSparse:
 org.macports.activate org.macports.destroot org.macports.install
 :error:destroot Failed to install SuiteSparse
 :debug:destroot Registry error: netpbm not registered as installed &
 active.
     invoked from within
 "registry_active $subport"
     invoked from within
 "$workername eval registry_active \$subport"
 :notice:destroot Please see the log file for port SuiteSparse for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_SuiteSparse/SuiteSparse/main.log
 }}}

--

Comment:

 Duplicate of #39072.

-- 
Ticket URL: <https://trac.macports.org/ticket/45728#comment:1>
MacPorts <https://www.macports.org/>
Ports system for OS X