[MacPorts] #46007: pymol crushes on Yosemite after a while
MacPorts
noreply at macports.org
Mon Nov 24 21:43:23 PST 2014
#46007: pymol crushes on Yosemite after a while
----------------------------+-----------------------------------
Reporter: barak.raveh@… | Owner: howarth.at.macports@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.3.3
Resolution: | Keywords:
Port: pymol |
----------------------------+-----------------------------------
Changes (by ryandesign@…):
* keywords: pymol NSScreen =>
* owner: macports-tickets@… => howarth.at.macports@…
Old description:
> Pymol seems to work normally on yosemite but then crushes after a short
> while with message:
> *** Terminating app due to uncaught exception
> 'NSInternalInconsistencyException', reason: 'NSScreen reconfig must only
> happen on the main thread.'
> abort() called terminating with uncaught exception of type NSException
>
> Log below:
> ================
>
> Process: Python [1079]
> Path:
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
> Identifier: org.python.python
> Version: 2.7.8 (2.7.8)
> Code Type: X86-64 (Native)
> Parent Process: bash [688]
> Responsible: Terminal [685]
> User ID: 501
>
> Date/Time: 2014-11-24 16:10:56.440 -0800
> OS Version: Mac OS X 10.10.1 (14B25)
> Report Version: 11
> Anonymous UUID: C6F9D0BE-F02B-FF6C-5BBB-AAC0CD6EB628
>
> Time Awake Since Boot: 1100 seconds
>
> Crashed Thread: 4 Dispatch queue: com.apple.Xplugin.CGEventPort
>
> Exception Type: EXC_CRASH (SIGABRT)
> Exception Codes: 0x0000000000000000, 0x0000000000000000
>
> Application Specific Information:
> *** Terminating app due to uncaught exception
> 'NSInternalInconsistencyException', reason: 'NSScreen reconfig must only
> happen on the main thread.'
> abort() called
> terminating with uncaught exception of type NSException
>
> Application Specific Backtrace 1:
> 0 CoreFoundation 0x00007fff8ff8064c
> __exceptionPreprocess + 172
> 1 libobjc.A.dylib 0x00007fff8bc256de
> objc_exception_throw + 43
> 2 CoreFoundation 0x00007fff8ff8042a +[NSException
> raise:format:arguments:] + 106
> 3 Foundation 0x00007fff8d8fd5b9
> -[NSAssertionHandler
> handleFailureInMethod:object:file:lineNumber:description:] + 195
> 4 AppKit 0x00007fff8b5c6f13 +[NSScreen
> _invalidateIfNeededForReason:] + 139
> 5 AppKit 0x00007fff8b347ffd
> -[NSApplication _reactToDockChanged] + 29
> 6 AppKit 0x00007fff8b27f16c
> _NSCoreDockMessageReceive + 802
> 7 HIToolbox 0x00007fff8ef5fe48
> _ZL12DockCallbackjjPvS_ + 1845
> 8 HIServices 0x00007fff8bbd8c16
> dockClientNotificationProc + 171
> 9 CoreGraphics 0x00007fff92e3fb33
> _ZNK21CGSConnectionNotifier16invoke_callbacksEjPvm + 601
> 10 CoreGraphics 0x00007fff92e3f872
> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ + 103
> 11 CoreGraphics 0x00007fff92df7fe7
> _ZN21CGSDatagramReadStream22dispatch_next_datagramEv + 779
> 12 CoreGraphics 0x00007fff92df7ccc
> _ZN21CGSDatagramReadStream18dispatch_datagramsEv + 50
> 13 CoreGraphics 0x00007fff92df7ae1
> CGSDatagramReadStreamDispatchDatagramsWithData + 109
> 14 CoreGraphics 0x00007fff92df7897
> CGSSnarfAndDispatchDatagrams + 427
> 15 CoreGraphics 0x00007fff92df75e8
> CGSGetNextEventRecordInternal + 92
> 16 CoreGraphics 0x00007fff92df7533
> CGEventCreateNextEvent + 48
> 17 libXplugin.1.dylib 0x000000010559495c
> ___xp_init_service_cg_event_port_block_invoke + 106
> 18 libdispatch.dylib 0x00007fff94922c13
> _dispatch_client_callout + 8
> 19 libdispatch.dylib 0x00007fff9492d87e
> _dispatch_source_latch_and_call + 721
> 20 libdispatch.dylib 0x00007fff9492662b
> _dispatch_source_invoke + 412
> 21 libdispatch.dylib 0x00007fff94926154
> _dispatch_queue_drain + 571
> 22 libdispatch.dylib 0x00007fff94927ecc
> _dispatch_queue_invoke + 202
> 23 libdispatch.dylib 0x00007fff949256b7
> _dispatch_root_queue_drain + 463
> 24 libdispatch.dylib 0x00007fff94933fe4
> _dispatch_worker_thread3 + 91
> 25 libsystem_pthread.dylib 0x00007fff896786cb
> _pthread_wqthread + 729
> 26 libsystem_pthread.dylib 0x00007fff896764a1 start_wqthread
> + 13
>
> Thread 0:: Dispatch queue: com.apple.main-thread
> 0 libsystem_kernel.dylib 0x00007fff8db4f3f6 __select + 10
> 1 _cmd.so 0x0000000104cd8eab MainBusyIdle +
> 1051
> 2 libglut.3.dylib 0x0000000105524cd8 glutMainLoop +
> 153
> 3 _cmd.so 0x0000000104cd7ad6 main_common +
> 1238
> 4 _cmd.so 0x0000000104cd7c2c main_shared +
> 108
> 5 _cmd.so 0x0000000104ccca2a CmdRunPyMOL +
> 90
> 6 org.python.python 0x0000000104680021
> PyEval_EvalFrameEx + 19649
> 7 org.python.python 0x000000010467b052
> PyEval_EvalCodeEx + 1538
> 8 org.python.python 0x0000000104682ad5 fast_function
> + 117
> 9 org.python.python 0x000000010467ec1d
> PyEval_EvalFrameEx + 14525
> 10 org.python.python 0x000000010467b052
> PyEval_EvalCodeEx + 1538
> 11 org.python.python 0x000000010467aa46
> PyEval_EvalCode + 54
> 12 org.python.python 0x00000001046a4884
> PyRun_FileExFlags + 164
> 13 org.python.python 0x00000001046a4401
> PyRun_SimpleFileExFlags + 769
> 14 org.python.python 0x00000001046b9e98 Py_Main + 3096
> 15 libdyld.dylib 0x00007fff88e0a5c9 start + 1
>
> Thread 1:: Dispatch queue: com.apple.libdispatch-manager
> 0 libsystem_kernel.dylib 0x00007fff8db5022e kevent64 + 10
> 1 libdispatch.dylib 0x00007fff94925a6a
> _dispatch_mgr_thread + 52
>
> Thread 2:
> 0 libsystem_kernel.dylib 0x00007fff8db4f3f6 __select + 10
> 1 libsystem_pthread.dylib 0x00007fff896782fc _pthread_body
> + 131
> 2 libsystem_pthread.dylib 0x00007fff89678279 _pthread_start
> + 176
> 3 libsystem_pthread.dylib 0x00007fff896764b1 thread_start +
> 13
>
> Thread 3:
> 0 libsystem_kernel.dylib 0x00007fff8db4f3f6 __select + 10
> 1 org.python.python 0x0000000104680021
> PyEval_EvalFrameEx + 19649
> 2 org.python.python 0x000000010467b052
> PyEval_EvalCodeEx + 1538
> 3 org.python.python 0x0000000104682ad5 fast_function
> + 117
> 4 org.python.python 0x000000010467ec1d
> PyEval_EvalFrameEx + 14525
> 5 org.python.python 0x000000010467b052
> PyEval_EvalCodeEx + 1538
> 6 org.python.python 0x0000000104606b6c function_call
> + 364
> 7 org.python.python 0x00000001045e1033 PyObject_Call
> + 99
> 8 org.python.python 0x000000010467e980
> PyEval_EvalFrameEx + 13856
> 9 org.python.python 0x0000000104682b72 fast_function
> + 274
> 10 org.python.python 0x000000010467ec1d
> PyEval_EvalFrameEx + 14525
> 11 org.python.python 0x0000000104682b72 fast_function
> + 274
> 12 org.python.python 0x000000010467ec1d
> PyEval_EvalFrameEx + 14525
> 13 org.python.python 0x000000010467b052
> PyEval_EvalCodeEx + 1538
> 14 org.python.python 0x0000000104606b6c function_call
> + 364
> 15 org.python.python 0x00000001045e1033 PyObject_Call
> + 99
> 16 org.python.python 0x00000001045ee226
> instancemethod_call + 182
> 17 org.python.python 0x00000001045e1033 PyObject_Call
> + 99
> 18 org.python.python 0x00000001046822cd
> PyEval_CallObjectWithKeywords + 93
> 19 org.python.python 0x00000001046bc0c6 t_bootstrap +
> 70
> 20 libsystem_pthread.dylib 0x00007fff896782fc _pthread_body
> + 131
> 21 libsystem_pthread.dylib 0x00007fff89678279 _pthread_start
> + 176
> 22 libsystem_pthread.dylib 0x00007fff896764b1 thread_start +
> 13
>
> Thread 4 Crashed:: Dispatch queue: com.apple.Xplugin.CGEventPort
> 0 libsystem_kernel.dylib 0x00007fff8db4f282 __pthread_kill
> + 10
> 1 libsystem_c.dylib 0x00007fff90b6fb73 abort + 129
> 2 libc++abi.dylib 0x00007fff92d1ba21 abort_message
> + 257
> 3 libc++abi.dylib 0x00007fff92d439d1
> default_terminate_handler() + 267
> 4 libobjc.A.dylib 0x00007fff8bc296c6
> _objc_terminate() + 103
> 5 libc++abi.dylib 0x00007fff92d410a1
> std::__terminate(void (*)()) + 8
> 6 libc++abi.dylib 0x00007fff92d41113
> std::terminate() + 51
> 7 libobjc.A.dylib 0x00007fff8bc294ef objc_terminate
> + 9
> 8 libdispatch.dylib 0x00007fff94922c27
> _dispatch_client_callout + 28
> 9 libdispatch.dylib 0x00007fff9492d87e
> _dispatch_source_latch_and_call + 721
> 10 libdispatch.dylib 0x00007fff9492662b
> _dispatch_source_invoke + 412
> 11 libdispatch.dylib 0x00007fff94926154
> _dispatch_queue_drain + 571
> 12 libdispatch.dylib 0x00007fff94927ecc
> _dispatch_queue_invoke + 202
> 13 libdispatch.dylib 0x00007fff949256b7
> _dispatch_root_queue_drain + 463
> 14 libdispatch.dylib 0x00007fff94933fe4
> _dispatch_worker_thread3 + 91
> 15 libsystem_pthread.dylib 0x00007fff896786cb
> _pthread_wqthread + 729
> 16 libsystem_pthread.dylib 0x00007fff896764a1 start_wqthread
> + 13
>
> Thread 4 crashed with X86 Thread State (64-bit):
> rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx:
> 0x000000010d778748 rdx: 0x0000000000000000
> rdi: 0x000000000000291b rsi: 0x0000000000000006 rbp:
> 0x000000010d778770 rsp: 0x000000010d778748
> r8: 0x0000000000000000 r9: 0x00007fff90b99d90 r10:
> 0x000000000c000000 r11: 0x0000000000000206
> r12: 0x000000010d7788d0 r13: 0x0000000000000000 r14:
> 0x000000010d779000 r15: 0x000000010d7787b0
> rip: 0x00007fff8db4f282 rfl: 0x0000000000000206 cr2:
> 0x00007fff7779cfd8
>
> Logical CPU: 0
> Error Code: 0x02000148
> Trap Number: 133
>
> Binary Images:
> 0x1045ce000 - 0x1045cffff +org.python.python (2.7.8 -
> 2.7.8) <73489B6E-F5D3-30C3-B3A9-269DDF219B22>
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
> 0x1045d3000 - 0x1046fbff7 +org.python.python (2.7.8, [c]
> 2004-2014 Python Software Foundation. - 2.7.8) <09D584C0-9247-310C-905C-
> 2B06174EF18F>
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/Python
> 0x104a54000 - 0x104a57ff7 +_collections.so (0) <BB581287
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> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/_collections.so
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> <F3DA27F5-3262-3747-AFD6-DA23BF315887>
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> /lib-dynload/operator.so
> 0x104a67000 - 0x104a6cff7 +itertools.so (0)
> <464C588A-6969-3302-ADE9-1945265C0C1D>
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> /lib-dynload/itertools.so
> 0x104a77000 - 0x104a78ff7 +_heapq.so (0)
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> /lib-dynload/_heapq.so
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> /lib-dynload/time.so
> 0x104a84000 - 0x104a87ff7 +strop.so (0) <5F15490D-
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> /lib-dynload/math.so
> 0x104a97000 - 0x104dacfff +_cmd.so (0) <3FD96CCB-
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> /site-packages/pymol/_cmd.so
> 0x1052a9000 - 0x1052ccff7 +libpng16.16.dylib (0) <48E44E3E-
> EB99-3DED-A29D-CE1872E39BC9> /opt/local/lib/libpng16.16.dylib
> 0x1052d5000 - 0x105347ff7 +libfreetype.6.dylib (0)
> <FC540572-D3DF-3F89-AE08-B445CF2F18A4> /opt/local/lib/libfreetype.6.dylib
> 0x10535e000 - 0x1053c4fff +libGLEW.1.11.0.dylib (0)
> <5B193BFB-5937-3895-B42B-DABF32091D54>
> /opt/local/lib/libGLEW.1.11.0.dylib
> 0x1053f7000 - 0x10543dff7 +libGL.1.dylib (0)
> <2DFF3117-E791-397B-A579-3664FD6FE888> /opt/local/lib/libGL.1.dylib
> 0x105489000 - 0x1054e0fff +libGLU.1.dylib (0)
> <C31407D8-F10D-3081-B175-FBB5A158F957> /opt/local/lib/libGLU.1.dylib
> 0x105517000 - 0x10553dfff +libglut.3.dylib (0)
> <F1B7D645-0B39-351D-B272-5008F85771EE> /opt/local/lib/libglut.3.dylib
> 0x105560000 - 0x105570fff +libz.1.dylib (0)
> <46703014-51A6-3365-9D23-49E48E055548> /opt/local/lib/libz.1.dylib
> 0x105574000 - 0x105583fff +libbz2.1.0.dylib (0)
> <02AE79D1-9CF6-371C-98EF-74E84D5A473A> /opt/local/lib/libbz2.1.0.dylib
> 0x105587000 - 0x10558bfff com.apple.agl (3.3.0 -
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> /System/Library/Frameworks/AGL.framework/Versions/A/AGL
> 0x105592000 - 0x10559eff7 libXplugin.1.dylib (44)
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> 0x1055ab000 - 0x1055bafff +libxcb.1.dylib (0) <640DCD35
> -80DB-30B3-91DC-302AAE575A1B> /opt/local/lib/libxcb.1.dylib
> 0x1055c9000 - 0x1056befff +libX11.6.dylib (0)
> <3683B8D4-2656-3D28-BB30-24362FDB1182> /opt/local/lib/libX11.6.dylib
> 0x1056e2000 - 0x1056ecff7 +libXext.6.dylib (0) <74B32F1D-
> 86BF-3E23-9276-01087B166CAA> /opt/local/lib/libXext.6.dylib
> 0x1056f2000 - 0x1056f3fff +libXau.6.dylib (0) <2F57A31E-
> B0E0-36A2-8A01-204ADA156FB6> /opt/local/lib/libXau.6.dylib
> 0x1056f6000 - 0x1056f9fff +libXdmcp.6.dylib (0) <74AC7C1B-
> B95B-38CC-95D9-76B5DB7470B8> /opt/local/lib/libXdmcp.6.dylib
> 0x1056fc000 - 0x105707ff7 +libXi.6.dylib (0) <4A04A152
> -E46C-38B6-AC73-94E310AF56BC> /opt/local/lib/libXi.6.dylib
> 0x10570b000 - 0x105711fff +libXrandr.2.dylib (0)
> <0A4E0B18-B2F0-317A-BDEC-1511F079378F> /opt/local/lib/libXrandr.2.dylib
> 0x105715000 - 0x105718fff +libXxf86vm.1.dylib (0) <F6270840
> -9E2F-3D72-94FF-73292C18ED66> /opt/local/lib/libXxf86vm.1.dylib
> 0x10571b000 - 0x105721fff +libXrender.1.dylib (0)
> <901A86DD-1FBB-39C1-AE0D-E9C60E5ACA50> /opt/local/lib/libXrender.1.dylib
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> /lib-dynload/_struct.so
> 0x10575f000 - 0x105762fff +binascii.so (0) <CB4CA57B-2EDD-
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> /lib-dynload/binascii.so
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> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/cStringIO.so
> 0x10576c000 - 0x105779ff7 +cPickle.so (0) <1443C922-CCA5
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> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/cPickle.so
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> /lib-dynload/_hashlib.so
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> 0x1058e6000 - 0x105a01fc7 +libcrypto.1.0.0.dylib (0)
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> /lib-dynload/_random.so
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> /lib-dynload/zlib.so
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> /lib-dynload/_io.so
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> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/fcntl.so
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> <2DCF62FB-CC3A-35F9-A3A0-3D7251EA347F>
> /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupport.dylib
> 0x1074b7000 - 0x1074bfff7 +_tkinter.so (0)
> <048EFA14-4348-30F9-936B-E67F3716E0CA>
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /site-packages/_tkinter.so
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> <6A04F732-29BA-31B1-A113-1B9297176D93> /opt/local/lib/libtk8.6.dylib
> 0x109795000 - 0x109796ff7 +_functools.so (0)
> <9B2CA8F1-8DE4-3746-A621-4CF73F00BEAE>
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/_functools.so
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> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/_socket.so
> 0x10b673000 - 0x10b677fff +_ssl.so (0) <C06AA300-2450-3CBA-
> 883D-204A068FFCA1>
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/_ssl.so
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> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/datetime.so
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> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /lib-dynload/pyexpat.so
> 0x10c35f000 - 0x10c387ffb libRIP.A.dylib (772) <9262437A-
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> /System/Library/PrivateFrameworks/FaceCore.framework/Versions/A/FaceCore
> 0x7fff92999000 - 0x7fff92999fff com.apple.Carbon (154 - 157)
> <6E3AEB9D-7643-36BE-A7E5-D08886649257>
> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
> 0x7fff92a27000 - 0x7fff92a34fff com.apple.ProtocolBuffer (1 -
> 225.1) <2D502FBB-D2A0-3937-A5C5-385FA65B3874>
> /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
> 0x7fff92ae8000 - 0x7fff92aedff7 libunwind.dylib (35.3) <BE7E51A0
> -B6EA-3A54-9CCA-9D88F683A6D6> /usr/lib/system/libunwind.dylib
> 0x7fff92af5000 - 0x7fff92afdff7 com.apple.icloud.FindMyDevice
> (1.0 - 1) <D198E170-3610-3727-BC87-73AD249CA097>
> /System/Library/PrivateFrameworks/FindMyDevice.framework/Versions/A/FindMyDevice
> 0x7fff92c56000 - 0x7fff92cccfe7 libcorecrypto.dylib (233.1.2)
> <E1789801-3985-3949-B736-6B3378873301>
> /usr/lib/system/libcorecrypto.dylib
> 0x7fff92d1b000 - 0x7fff92d46fff libc++abi.dylib (125) <88A22A0F-
> 87C6-3002-BFBA-AC0F2808B8B9> /usr/lib/libc++abi.dylib
> 0x7fff92dc5000 - 0x7fff9361cff3 com.apple.CoreGraphics (1.600.0
> - 772) <6364CBE3-3635-3A53-B448-9D19EF9FEA96>
> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
> 0x7fff9365a000 - 0x7fff93663ff3 com.apple.CommonAuth (4.0 - 2.0)
> <F4C266BE-2E0E-36B4-9DE7-C6B4BF410FD7>
> /System/Library/PrivateFrameworks/CommonAuth.framework/Versions/A/CommonAuth
> 0x7fff93849000 - 0x7fff93979fff com.apple.UIFoundation (1.0 - 1)
> <8E030D93-441C-3997-9CD2-55C8DFAC8B84>
> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
> 0x7fff9397a000 - 0x7fff93989fff com.apple.LangAnalysis (1.7.0 -
> 1.7.0) <D1E527E4-C561-352F-9457-E8C50232793C>
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
> 0x7fff942c2000 - 0x7fff942d4ff7 com.apple.ImageCapture (9.0 -
> 9.0) <7FB65DD4-56B5-35C4-862C-7A2DED991D1F>
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
> 0x7fff94324000 - 0x7fff943a1fff
> com.apple.CoreServices.OSServices (640.3 - 640.3)
> <28445162-08E9-3E24-84E4-617CE5FE1367>
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
> 0x7fff943a2000 - 0x7fff943dafff com.apple.RemoteViewServices
> (2.0 - 99) <C9A62691-B0D9-34B7-B71C-A48B5F4DC553>
> /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
> 0x7fff947cc000 - 0x7fff948affff libcrypto.0.9.8.dylib (52)
> <7208EEE2-C090-383E-AADD-7E1BD1321BEC> /usr/lib/libcrypto.0.9.8.dylib
> 0x7fff948b0000 - 0x7fff94904fff libc++.1.dylib (120) <1B9530FD-
> 989B-3174-BB1C-BDC159501710> /usr/lib/libc++.1.dylib
> 0x7fff94905000 - 0x7fff9491bff7 libsystem_asl.dylib (267)
> <F153AC5B-0542-356E-88C8-20A62CA704E2>
> /usr/lib/system/libsystem_asl.dylib
> 0x7fff94921000 - 0x7fff9494bff7 libdispatch.dylib (442.1.4)
> <502CF32B-669B-3709-8862-08188225E4F0> /usr/lib/system/libdispatch.dylib
> 0x7fff9494c000 - 0x7fff9494cfff com.apple.Accelerate.vecLib
> (3.10 - vecLib 3.10) <A48738CA-5B6F-3D14-97E9-2BFDFC3DCC06>
> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
> 0x7fff9494d000 - 0x7fff94972ff7 libPng.dylib (1231)
> <2D5AC0EE-4056-3F76-97E7-BBD415F072B5>
> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
> 0x7fff94973000 - 0x7fff94a14ff7 com.apple.Bluetooth (4.3.1 -
> 4.3.1f2) <EDC78AEE-28E7-324C-9947-41A0814A8154>
> /System/Library/Frameworks/IOBluetooth.framework/Versions/A/IOBluetooth
> 0x7fff94a8a000 - 0x7fff94a8cff7 libsystem_coreservices.dylib (9)
> <41B7C578-5A53-31C8-A96F-C73E030B0938>
> /usr/lib/system/libsystem_coreservices.dylib
> 0x7fff94b97000 - 0x7fff94bb3ff7 libsystem_malloc.dylib (53.1.1)
> <19BCC257-5717-3502-A71F-95D65AFA861B>
> /usr/lib/system/libsystem_malloc.dylib
> 0x7fff94bb4000 - 0x7fff94bc7ff7 com.apple.CoreBluetooth (1.0 -
> 1) <FA9B43B3-E183-3040-AE25-66EF9870CF35>
> /System/Library/Frameworks/CoreBluetooth.framework/Versions/A/CoreBluetooth
> 0x7fff94bd5000 - 0x7fff94c23fff libcurl.4.dylib (83.1.2)
> <337A1FF8-E8B1-3173-9F29-C0D4C851D8E1> /usr/lib/libcurl.4.dylib
> 0x7fff94c24000 - 0x7fff95077fc7 com.apple.vImage (8.0 - 8.0)
> <33BE7B31-72DB-3364-B37E-C322A32748C5>
> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
> 0x7fff95078000 - 0x7fff9507aff7 libsystem_sandbox.dylib
> (358.1.1) <DB9962EF-8898-31CC-9B87-E01F8CE74C9D>
> /usr/lib/system/libsystem_sandbox.dylib
> 0x7fff956ae000 - 0x7fff956d8fff GLRendererFloat (11.0.7)
> <3B3B74F4-E63C-3241-8807-E2407C4020B2>
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
> 0x7fff956e5000 - 0x7fff9577aff7 com.apple.ColorSync (4.9.0 -
> 4.9.0) <F06733BD-A10C-3DB3-B050-825351130392>
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
> 0x7fff95790000 - 0x7fff95804fff
> com.apple.ApplicationServices.ATS (360 - 375) <62828B40-231D-
> 3F81-8067-1903143DCB6B>
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
>
> External Modification Summary:
> Calls made by other processes targeting this process:
> task_for_pid: 1
> thread_create: 0
> thread_set_state: 0
> Calls made by this process:
> task_for_pid: 0
> thread_create: 0
> thread_set_state: 0
> Calls made by all processes on this machine:
> task_for_pid: 531
> thread_create: 0
> thread_set_state: 0
>
> VM Region Summary:
> ReadOnly portion of Libraries: Total=203.8M resident=106.3M(52%)
> swapped_out_or_unallocated=97.5M(48%)
> Writable regions: Total=179.9M written=31.8M(18%) resident=64.3M(36%)
> swapped_out=0K(0%) unallocated=115.6M(64%)
>
> REGION TYPE VIRTUAL
> =========== =======
> ATS (font support) 32.3M
> ATS (font support) (reserved) 4K reserved VM address space
> (unallocated)
> CG backing stores 644K
> CG image 4K
> CG shared images 208K
> CoreServices 1028K
> CoreUI image data 4K
> Dispatch continuations 8192K
> IOKit 6796K
> Kernel Alloc Once 8K
> MALLOC 104.8M
> MALLOC (admin) 32K
> MALLOC_LARGE (reserved) 1484K reserved VM address space
> (unallocated)
> Memory Tag 251 8K
> OpenGL GLSL 256K
> STACK GUARD 56.0M
> Stack 13.1M
> VM_ALLOCATE 11.0M
> __DATA 20.8M
> __GLSLBUILTINS 2588K
> __IMAGE 528K
> __LINKEDIT 74.5M
> __TEXT 129.3M
> __UNICODE 544K
> mapped file 65.4M
> shared memory 68K
> =========== =======
> TOTAL 529.0M
> TOTAL, minus reserved VM space 527.6M
>
> Model: MacBookAir4,2, BootROM MBA41.0077.B11, 2 processors, Intel Core
> i5, 1.7 GHz, 4 GB, SMC 1.73f66
> Graphics: Intel HD Graphics 3000, Intel HD Graphics 3000, Built-In, 384
> MB
> Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
> 0x4D34373142353737334448302D4348392020
> Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
> 0x4D34373142353737334448302D4348392020
> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xE9),
> Broadcom BCM43xx 1.0 (5.106.98.100.24)
> Bluetooth: Version 4.3.1f2 15015, 3 services, 19 devices, 1 incoming
> serial ports
> Network Service: Wi-Fi, AirPort, en0
> Serial ATA Device: APPLE SSD SM256C, 251 GB
> USB Device: Hub
> USB Device: Internal Memory Card Reader
> USB Device: Hub
> USB Device: Apple Internal Keyboard / Trackpad
> USB Device: BRCM20702 Hub
> USB Device: Bluetooth USB Host Controller
> USB Device: FaceTime Camera (Built-in)
> Thunderbolt Bus: MacBook Air, Apple Inc., 8.1
New description:
Pymol seems to work normally on yosemite but then crushes after a short
while with message:
{{{
*** Terminating app due to uncaught exception
'NSInternalInconsistencyException', reason: 'NSScreen reconfig must only
happen on the main thread.'
abort() called terminating with uncaught exception of type NSException
}}}
Log below:
{{{
Process: Python [1079]
Path:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: org.python.python
Version: 2.7.8 (2.7.8)
Code Type: X86-64 (Native)
Parent Process: bash [688]
Responsible: Terminal [685]
User ID: 501
Date/Time: 2014-11-24 16:10:56.440 -0800
OS Version: Mac OS X 10.10.1 (14B25)
Report Version: 11
Anonymous UUID: C6F9D0BE-F02B-FF6C-5BBB-AAC0CD6EB628
Time Awake Since Boot: 1100 seconds
Crashed Thread: 4 Dispatch queue: com.apple.Xplugin.CGEventPort
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Application Specific Information:
*** Terminating app due to uncaught exception
'NSInternalInconsistencyException', reason: 'NSScreen reconfig must only
happen on the main thread.'
abort() called
terminating with uncaught exception of type NSException
Application Specific Backtrace 1:
0 CoreFoundation 0x00007fff8ff8064c
__exceptionPreprocess + 172
1 libobjc.A.dylib 0x00007fff8bc256de
objc_exception_throw + 43
2 CoreFoundation 0x00007fff8ff8042a +[NSException
raise:format:arguments:] + 106
3 Foundation 0x00007fff8d8fd5b9
-[NSAssertionHandler
handleFailureInMethod:object:file:lineNumber:description:] + 195
4 AppKit 0x00007fff8b5c6f13 +[NSScreen
_invalidateIfNeededForReason:] + 139
5 AppKit 0x00007fff8b347ffd -[NSApplication
_reactToDockChanged] + 29
6 AppKit 0x00007fff8b27f16c
_NSCoreDockMessageReceive + 802
7 HIToolbox 0x00007fff8ef5fe48
_ZL12DockCallbackjjPvS_ + 1845
8 HIServices 0x00007fff8bbd8c16
dockClientNotificationProc + 171
9 CoreGraphics 0x00007fff92e3fb33
_ZNK21CGSConnectionNotifier16invoke_callbacksEjPvm + 601
10 CoreGraphics 0x00007fff92e3f872
_ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ + 103
11 CoreGraphics 0x00007fff92df7fe7
_ZN21CGSDatagramReadStream22dispatch_next_datagramEv + 779
12 CoreGraphics 0x00007fff92df7ccc
_ZN21CGSDatagramReadStream18dispatch_datagramsEv + 50
13 CoreGraphics 0x00007fff92df7ae1
CGSDatagramReadStreamDispatchDatagramsWithData + 109
14 CoreGraphics 0x00007fff92df7897
CGSSnarfAndDispatchDatagrams + 427
15 CoreGraphics 0x00007fff92df75e8
CGSGetNextEventRecordInternal + 92
16 CoreGraphics 0x00007fff92df7533
CGEventCreateNextEvent + 48
17 libXplugin.1.dylib 0x000000010559495c
___xp_init_service_cg_event_port_block_invoke + 106
18 libdispatch.dylib 0x00007fff94922c13
_dispatch_client_callout + 8
19 libdispatch.dylib 0x00007fff9492d87e
_dispatch_source_latch_and_call + 721
20 libdispatch.dylib 0x00007fff9492662b
_dispatch_source_invoke + 412
21 libdispatch.dylib 0x00007fff94926154
_dispatch_queue_drain + 571
22 libdispatch.dylib 0x00007fff94927ecc
_dispatch_queue_invoke + 202
23 libdispatch.dylib 0x00007fff949256b7
_dispatch_root_queue_drain + 463
24 libdispatch.dylib 0x00007fff94933fe4
_dispatch_worker_thread3 + 91
25 libsystem_pthread.dylib 0x00007fff896786cb
_pthread_wqthread + 729
26 libsystem_pthread.dylib 0x00007fff896764a1 start_wqthread
+ 13
Thread 0:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff8db4f3f6 __select + 10
1 _cmd.so 0x0000000104cd8eab MainBusyIdle +
1051
2 libglut.3.dylib 0x0000000105524cd8 glutMainLoop +
153
3 _cmd.so 0x0000000104cd7ad6 main_common +
1238
4 _cmd.so 0x0000000104cd7c2c main_shared +
108
5 _cmd.so 0x0000000104ccca2a CmdRunPyMOL +
90
6 org.python.python 0x0000000104680021
PyEval_EvalFrameEx + 19649
7 org.python.python 0x000000010467b052
PyEval_EvalCodeEx + 1538
8 org.python.python 0x0000000104682ad5 fast_function +
117
9 org.python.python 0x000000010467ec1d
PyEval_EvalFrameEx + 14525
10 org.python.python 0x000000010467b052
PyEval_EvalCodeEx + 1538
11 org.python.python 0x000000010467aa46 PyEval_EvalCode
+ 54
12 org.python.python 0x00000001046a4884
PyRun_FileExFlags + 164
13 org.python.python 0x00000001046a4401
PyRun_SimpleFileExFlags + 769
14 org.python.python 0x00000001046b9e98 Py_Main + 3096
15 libdyld.dylib 0x00007fff88e0a5c9 start + 1
Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff8db5022e kevent64 + 10
1 libdispatch.dylib 0x00007fff94925a6a
_dispatch_mgr_thread + 52
Thread 2:
0 libsystem_kernel.dylib 0x00007fff8db4f3f6 __select + 10
1 libsystem_pthread.dylib 0x00007fff896782fc _pthread_body +
131
2 libsystem_pthread.dylib 0x00007fff89678279 _pthread_start
+ 176
3 libsystem_pthread.dylib 0x00007fff896764b1 thread_start +
13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff8db4f3f6 __select + 10
1 org.python.python 0x0000000104680021
PyEval_EvalFrameEx + 19649
2 org.python.python 0x000000010467b052
PyEval_EvalCodeEx + 1538
3 org.python.python 0x0000000104682ad5 fast_function +
117
4 org.python.python 0x000000010467ec1d
PyEval_EvalFrameEx + 14525
5 org.python.python 0x000000010467b052
PyEval_EvalCodeEx + 1538
6 org.python.python 0x0000000104606b6c function_call +
364
7 org.python.python 0x00000001045e1033 PyObject_Call +
99
8 org.python.python 0x000000010467e980
PyEval_EvalFrameEx + 13856
9 org.python.python 0x0000000104682b72 fast_function +
274
10 org.python.python 0x000000010467ec1d
PyEval_EvalFrameEx + 14525
11 org.python.python 0x0000000104682b72 fast_function +
274
12 org.python.python 0x000000010467ec1d
PyEval_EvalFrameEx + 14525
13 org.python.python 0x000000010467b052
PyEval_EvalCodeEx + 1538
14 org.python.python 0x0000000104606b6c function_call +
364
15 org.python.python 0x00000001045e1033 PyObject_Call +
99
16 org.python.python 0x00000001045ee226
instancemethod_call + 182
17 org.python.python 0x00000001045e1033 PyObject_Call +
99
18 org.python.python 0x00000001046822cd
PyEval_CallObjectWithKeywords + 93
19 org.python.python 0x00000001046bc0c6 t_bootstrap +
70
20 libsystem_pthread.dylib 0x00007fff896782fc _pthread_body +
131
21 libsystem_pthread.dylib 0x00007fff89678279 _pthread_start
+ 176
22 libsystem_pthread.dylib 0x00007fff896764b1 thread_start +
13
Thread 4 Crashed:: Dispatch queue: com.apple.Xplugin.CGEventPort
0 libsystem_kernel.dylib 0x00007fff8db4f282 __pthread_kill
+ 10
1 libsystem_c.dylib 0x00007fff90b6fb73 abort + 129
2 libc++abi.dylib 0x00007fff92d1ba21 abort_message +
257
3 libc++abi.dylib 0x00007fff92d439d1
default_terminate_handler() + 267
4 libobjc.A.dylib 0x00007fff8bc296c6
_objc_terminate() + 103
5 libc++abi.dylib 0x00007fff92d410a1
std::__terminate(void (*)()) + 8
6 libc++abi.dylib 0x00007fff92d41113
std::terminate() + 51
7 libobjc.A.dylib 0x00007fff8bc294ef objc_terminate
+ 9
8 libdispatch.dylib 0x00007fff94922c27
_dispatch_client_callout + 28
9 libdispatch.dylib 0x00007fff9492d87e
_dispatch_source_latch_and_call + 721
10 libdispatch.dylib 0x00007fff9492662b
_dispatch_source_invoke + 412
11 libdispatch.dylib 0x00007fff94926154
_dispatch_queue_drain + 571
12 libdispatch.dylib 0x00007fff94927ecc
_dispatch_queue_invoke + 202
13 libdispatch.dylib 0x00007fff949256b7
_dispatch_root_queue_drain + 463
14 libdispatch.dylib 0x00007fff94933fe4
_dispatch_worker_thread3 + 91
15 libsystem_pthread.dylib 0x00007fff896786cb
_pthread_wqthread + 729
16 libsystem_pthread.dylib 0x00007fff896764a1 start_wqthread
+ 13
Thread 4 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx:
0x000000010d778748 rdx: 0x0000000000000000
rdi: 0x000000000000291b rsi: 0x0000000000000006 rbp:
0x000000010d778770 rsp: 0x000000010d778748
r8: 0x0000000000000000 r9: 0x00007fff90b99d90 r10:
0x000000000c000000 r11: 0x0000000000000206
r12: 0x000000010d7788d0 r13: 0x0000000000000000 r14:
0x000000010d779000 r15: 0x000000010d7787b0
rip: 0x00007fff8db4f282 rfl: 0x0000000000000206 cr2:
0x00007fff7779cfd8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0x1045ce000 - 0x1045cffff +org.python.python (2.7.8 - 2.7.8)
<73489B6E-F5D3-30C3-B3A9-269DDF219B22>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
0x1045d3000 - 0x1046fbff7 +org.python.python (2.7.8, [c]
2004-2014 Python Software Foundation. - 2.7.8) <09D584C0-9247-310C-905C-
2B06174EF18F>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/Python
0x104a54000 - 0x104a57ff7 +_collections.so (0) <BB581287
-25EA-374C-A426-870F8A950B26>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/lib-dynload/_collections.so
0x104a5d000 - 0x104a60fff +operator.so (0)
<F3DA27F5-3262-3747-AFD6-DA23BF315887>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/lib-dynload/operator.so
0x104a67000 - 0x104a6cff7 +itertools.so (0)
<464C588A-6969-3302-ADE9-1945265C0C1D>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/lib-dynload/itertools.so
0x104a77000 - 0x104a78ff7 +_heapq.so (0) <B9199927-4954-3B77
-B4AF-6E9755E8A65D>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/lib-dynload/_heapq.so
0x104a7c000 - 0x104a7efff +time.so (0) <5311D809-349F-
3F59-98D1-05CF4C02248D>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/lib-dynload/time.so
0x104a84000 - 0x104a87ff7 +strop.so (0) <5F15490D-
A4A0-3240-A152-90D961DE12DC>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/lib-dynload/strop.so
0x104a8c000 - 0x104a90ff7 +math.so (0) <DF17F0C9-B1FB-374F-
A5D7-A180CE6DF4E2>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/lib-dynload/math.so
0x104a97000 - 0x104dacfff +_cmd.so (0) <3FD96CCB-
5BD9-359D-9789-7810EAEB2679>
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/pymol/_cmd.so
0x1052a9000 - 0x1052ccff7 +libpng16.16.dylib (0) <48E44E3E-
EB99-3DED-A29D-CE1872E39BC9> /opt/local/lib/libpng16.16.dylib
0x1052d5000 - 0x105347ff7 +libfreetype.6.dylib (0) <FC540572
-D3DF-3F89-AE08-B445CF2F18A4> /opt/local/lib/libfreetype.6.dylib
0x10535e000 - 0x1053c4fff +libGLEW.1.11.0.dylib (0)
<5B193BFB-5937-3895-B42B-DABF32091D54> /opt/local/lib/libGLEW.1.11.0.dylib
0x1053f7000 - 0x10543dff7 +libGL.1.dylib (0)
<2DFF3117-E791-397B-A579-3664FD6FE888> /opt/local/lib/libGL.1.dylib
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1151.16) <F2B088AF-A5C6-3FAE-9EB4-7931AF6359E4>
/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff901b5000 - 0x7fff901c0ff7
com.apple.speech.synthesis.framework (5.2.6 - 5.2.6) <9434AA45-B6BD-
37F7-A866-172196A7F91B>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x7fff90472000 - 0x7fff90473ffb libremovefile.dylib (35)
<3485B5F4-6CE8-3C62-8DFD-8736ED6E8531> /usr/lib/system/libremovefile.dylib
0x7fff90483000 - 0x7fff9049dff7 com.apple.AppleVPAFramework
(1.0.30 - 1.0.30) <D47A2125-C72D-3298-B27D-D89EA0D55584>
/System/Library/PrivateFrameworks/AppleVPA.framework/Versions/A/AppleVPA
0x7fff904ce000 - 0x7fff904d7fff libGFXShared.dylib (11.0.7)
<EC449E3A-D9D2-3494-8B6C-DEB7B11EEDAB>
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff904d8000 - 0x7fff9055afff com.apple.PerformanceAnalysis
(1.0 - 1) <2FC0F303-B672-3E64-A978-AB78EAD98395>
/System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis
0x7fff906aa000 - 0x7fff90979ff3 com.apple.CoreImage (10.0.33)
<6E3DDA29-718B-3BDB-BFAF-F8C201BF93A4>
/System/Library/Frameworks/QuartzCore.framework/Versions/A/Frameworks/CoreImage.framework/Versions/A/CoreImage
0x7fff909b0000 - 0x7fff909cdffb libresolv.9.dylib (57) <26B38E61
-298A-3C3A-82C1-3B5E98AD5E29> /usr/lib/libresolv.9.dylib
0x7fff90a12000 - 0x7fff90a16fff libpam.2.dylib (20) <E805398D-
9A92-31F8-8005-8DC188BD8B6E> /usr/lib/libpam.2.dylib
0x7fff90a17000 - 0x7fff90a1ffe7 libcldcpuengine.dylib (2.4.5)
<DF810F9A-1755-3283-82C3-D8192BCD8016>
/System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries/libcldcpuengine.dylib
0x7fff90a20000 - 0x7fff90a53ff7 com.apple.MediaKit (16 - 757)
<345EDAFE-3E39-3B0F-8D84-54657EC4396D>
/System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit
0x7fff90ada000 - 0x7fff90b11ffb com.apple.LDAPFramework (2.4.28 -
194.5) <4CFE8010-CE3F-35EC-90BA-529B74321029>
/System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
0x7fff90b12000 - 0x7fff90b9efff libsystem_c.dylib (1044.1.2)
<C185E862-7424-3210-B528-6B822577A4B8> /usr/lib/system/libsystem_c.dylib
0x7fff90f7d000 - 0x7fff90f7dff7 libkeymgr.dylib (28)
<77845842-DE70-3CC5-BD01-C3D14227CED5> /usr/lib/system/libkeymgr.dylib
0x7fff90f7e000 - 0x7fff90f80fff com.apple.EFILogin (2.0 - 2)
<F0269EE2-3686-3A8A-8B83-F86974E35E90>
/System/Library/PrivateFrameworks/EFILogin.framework/Versions/A/EFILogin
0x7fff9195f000 - 0x7fff919aeff7 com.apple.opencl (2.4.2 - 2.4.2)
<6AE26E08-6EFC-3E1B-B202-EFA9C3E5B9D4>
/System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff91a95000 - 0x7fff91a9cff7 libcompiler_rt.dylib (35)
<BF8FC133-EE10-3DA6-9B90-92039E28678F>
/usr/lib/system/libcompiler_rt.dylib
0x7fff91b65000 - 0x7fff91b90ff3 libarchive.2.dylib (30)
<8CBB4416-EBE9-3574-8ADC-44655D245F39> /usr/lib/libarchive.2.dylib
0x7fff91c04000 - 0x7fff91d26ff7 com.apple.LaunchServices (644.12
- 644.12) <D7710B20-0561-33BB-A3C8-463691D36E02>
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x7fff91d27000 - 0x7fff91e64fff com.apple.ImageIO.framework
(3.3.0 - 1038) <611BDFBA-4BAA-36A8-B7E0-3830F3375E53>
/System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO
0x7fff91edd000 - 0x7fff91f29fff com.apple.corelocation (1486.17 -
1615.21) <DB68CEB9-0D51-3CB9-86A4-B0400CE6C515>
/System/Library/Frameworks/CoreLocation.framework/Versions/A/CoreLocation
0x7fff91f2a000 - 0x7fff91f52fff libxpc.dylib (559.1.22)
<9437C02E-A07B-38C8-91CB-299FAA63083D> /usr/lib/system/libxpc.dylib
0x7fff91fb2000 - 0x7fff91fbfff7 libxar.1.dylib (254)
<CE10EFED-3066-3749-838A-6A15AC0DBCB6> /usr/lib/libxar.1.dylib
0x7fff92067000 - 0x7fff9206fff7 com.apple.AppleSRP (5.0 - 1)
<01EC5144-D09A-3D6A-AE35-F6D48585F154>
/System/Library/PrivateFrameworks/AppleSRP.framework/Versions/A/AppleSRP
0x7fff92070000 - 0x7fff920dcfff com.apple.framework.CoreWLAN (5.0
- 500.35.2) <ACBAAB0A-BCC7-37CF-AAFB-2DA1733F2682>
/System/Library/Frameworks/CoreWLAN.framework/Versions/A/CoreWLAN
0x7fff920dd000 - 0x7fff921a0ff7 libvMisc.dylib (512) <A4E39464
-52EA-34CB-9FFE-53E79B3C65F5>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x7fff921ac000 - 0x7fff921aeff7 libquarantine.dylib (76)
<DC041627-2D92-361C-BABF-A869A5C72293> /usr/lib/system/libquarantine.dylib
0x7fff921af000 - 0x7fff92417ffb com.apple.security (7.0 -
57031.1.35) <96141D1F-614E-32C4-8AC2-F47481F23F43>
/System/Library/Frameworks/Security.framework/Versions/A/Security
0x7fff92475000 - 0x7fff92480ff7 libcsfde.dylib (471) <797691FA-
FC0A-3A95-B6E8-BDB75AEAEDFD> /usr/lib/libcsfde.dylib
0x7fff92568000 - 0x7fff92998fff com.apple.vision.FaceCore (3.1.6
- 3.1.6) <C3B823AA-C261-37D3-B4AC-C59CE91C8241>
/System/Library/PrivateFrameworks/FaceCore.framework/Versions/A/FaceCore
0x7fff92999000 - 0x7fff92999fff com.apple.Carbon (154 - 157)
<6E3AEB9D-7643-36BE-A7E5-D08886649257>
/System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff92a27000 - 0x7fff92a34fff com.apple.ProtocolBuffer (1 -
225.1) <2D502FBB-D2A0-3937-A5C5-385FA65B3874>
/System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff92ae8000 - 0x7fff92aedff7 libunwind.dylib (35.3) <BE7E51A0
-B6EA-3A54-9CCA-9D88F683A6D6> /usr/lib/system/libunwind.dylib
0x7fff92af5000 - 0x7fff92afdff7 com.apple.icloud.FindMyDevice
(1.0 - 1) <D198E170-3610-3727-BC87-73AD249CA097>
/System/Library/PrivateFrameworks/FindMyDevice.framework/Versions/A/FindMyDevice
0x7fff92c56000 - 0x7fff92cccfe7 libcorecrypto.dylib (233.1.2)
<E1789801-3985-3949-B736-6B3378873301> /usr/lib/system/libcorecrypto.dylib
0x7fff92d1b000 - 0x7fff92d46fff libc++abi.dylib (125) <88A22A0F-
87C6-3002-BFBA-AC0F2808B8B9> /usr/lib/libc++abi.dylib
0x7fff92dc5000 - 0x7fff9361cff3 com.apple.CoreGraphics (1.600.0 -
772) <6364CBE3-3635-3A53-B448-9D19EF9FEA96>
/System/Library/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x7fff9365a000 - 0x7fff93663ff3 com.apple.CommonAuth (4.0 - 2.0)
<F4C266BE-2E0E-36B4-9DE7-C6B4BF410FD7>
/System/Library/PrivateFrameworks/CommonAuth.framework/Versions/A/CommonAuth
0x7fff93849000 - 0x7fff93979fff com.apple.UIFoundation (1.0 - 1)
<8E030D93-441C-3997-9CD2-55C8DFAC8B84>
/System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff9397a000 - 0x7fff93989fff com.apple.LangAnalysis (1.7.0 -
1.7.0) <D1E527E4-C561-352F-9457-E8C50232793C>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x7fff942c2000 - 0x7fff942d4ff7 com.apple.ImageCapture (9.0 -
9.0) <7FB65DD4-56B5-35C4-862C-7A2DED991D1F>
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff94324000 - 0x7fff943a1fff com.apple.CoreServices.OSServices
(640.3 - 640.3) <28445162-08E9-3E24-84E4-617CE5FE1367>
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x7fff943a2000 - 0x7fff943dafff com.apple.RemoteViewServices (2.0
- 99) <C9A62691-B0D9-34B7-B71C-A48B5F4DC553>
/System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
0x7fff947cc000 - 0x7fff948affff libcrypto.0.9.8.dylib (52)
<7208EEE2-C090-383E-AADD-7E1BD1321BEC> /usr/lib/libcrypto.0.9.8.dylib
0x7fff948b0000 - 0x7fff94904fff libc++.1.dylib (120) <1B9530FD-
989B-3174-BB1C-BDC159501710> /usr/lib/libc++.1.dylib
0x7fff94905000 - 0x7fff9491bff7 libsystem_asl.dylib (267)
<F153AC5B-0542-356E-88C8-20A62CA704E2> /usr/lib/system/libsystem_asl.dylib
0x7fff94921000 - 0x7fff9494bff7 libdispatch.dylib (442.1.4)
<502CF32B-669B-3709-8862-08188225E4F0> /usr/lib/system/libdispatch.dylib
0x7fff9494c000 - 0x7fff9494cfff com.apple.Accelerate.vecLib (3.10
- vecLib 3.10) <A48738CA-5B6F-3D14-97E9-2BFDFC3DCC06>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x7fff9494d000 - 0x7fff94972ff7 libPng.dylib (1231)
<2D5AC0EE-4056-3F76-97E7-BBD415F072B5>
/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x7fff94973000 - 0x7fff94a14ff7 com.apple.Bluetooth (4.3.1 -
4.3.1f2) <EDC78AEE-28E7-324C-9947-41A0814A8154>
/System/Library/Frameworks/IOBluetooth.framework/Versions/A/IOBluetooth
0x7fff94a8a000 - 0x7fff94a8cff7 libsystem_coreservices.dylib (9)
<41B7C578-5A53-31C8-A96F-C73E030B0938>
/usr/lib/system/libsystem_coreservices.dylib
0x7fff94b97000 - 0x7fff94bb3ff7 libsystem_malloc.dylib (53.1.1)
<19BCC257-5717-3502-A71F-95D65AFA861B>
/usr/lib/system/libsystem_malloc.dylib
0x7fff94bb4000 - 0x7fff94bc7ff7 com.apple.CoreBluetooth (1.0 - 1)
<FA9B43B3-E183-3040-AE25-66EF9870CF35>
/System/Library/Frameworks/CoreBluetooth.framework/Versions/A/CoreBluetooth
0x7fff94bd5000 - 0x7fff94c23fff libcurl.4.dylib (83.1.2)
<337A1FF8-E8B1-3173-9F29-C0D4C851D8E1> /usr/lib/libcurl.4.dylib
0x7fff94c24000 - 0x7fff95077fc7 com.apple.vImage (8.0 - 8.0)
<33BE7B31-72DB-3364-B37E-C322A32748C5>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x7fff95078000 - 0x7fff9507aff7 libsystem_sandbox.dylib (358.1.1)
<DB9962EF-8898-31CC-9B87-E01F8CE74C9D>
/usr/lib/system/libsystem_sandbox.dylib
0x7fff956ae000 - 0x7fff956d8fff GLRendererFloat (11.0.7)
<3B3B74F4-E63C-3241-8807-E2407C4020B2>
/System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff956e5000 - 0x7fff9577aff7 com.apple.ColorSync (4.9.0 -
4.9.0) <F06733BD-A10C-3DB3-B050-825351130392>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x7fff95790000 - 0x7fff95804fff com.apple.ApplicationServices.ATS
(360 - 375) <62828B40-231D-3F81-8067-1903143DCB6B>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 531
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=203.8M resident=106.3M(52%)
swapped_out_or_unallocated=97.5M(48%)
Writable regions: Total=179.9M written=31.8M(18%) resident=64.3M(36%)
swapped_out=0K(0%) unallocated=115.6M(64%)
REGION TYPE VIRTUAL
=========== =======
ATS (font support) 32.3M
ATS (font support) (reserved) 4K reserved VM address space
(unallocated)
CG backing stores 644K
CG image 4K
CG shared images 208K
CoreServices 1028K
CoreUI image data 4K
Dispatch continuations 8192K
IOKit 6796K
Kernel Alloc Once 8K
MALLOC 104.8M
MALLOC (admin) 32K
MALLOC_LARGE (reserved) 1484K reserved VM address space
(unallocated)
Memory Tag 251 8K
OpenGL GLSL 256K
STACK GUARD 56.0M
Stack 13.1M
VM_ALLOCATE 11.0M
__DATA 20.8M
__GLSLBUILTINS 2588K
__IMAGE 528K
__LINKEDIT 74.5M
__TEXT 129.3M
__UNICODE 544K
mapped file 65.4M
shared memory 68K
=========== =======
TOTAL 529.0M
TOTAL, minus reserved VM space 527.6M
Model: MacBookAir4,2, BootROM MBA41.0077.B11, 2 processors, Intel Core i5,
1.7 GHz, 4 GB, SMC 1.73f66
Graphics: Intel HD Graphics 3000, Intel HD Graphics 3000, Built-In, 384 MB
Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
0x4D34373142353737334448302D4348392020
Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
0x4D34373142353737334448302D4348392020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xE9),
Broadcom BCM43xx 1.0 (5.106.98.100.24)
Bluetooth: Version 4.3.1f2 15015, 3 services, 19 devices, 1 incoming
serial ports
Network Service: Wi-Fi, AirPort, en0
Serial ATA Device: APPLE SSD SM256C, 251 GB
USB Device: Hub
USB Device: Internal Memory Card Reader
USB Device: Hub
USB Device: Apple Internal Keyboard / Trackpad
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
USB Device: FaceTime Camera (Built-in)
Thunderbolt Bus: MacBook Air, Apple Inc., 8.1
}}}
--
Comment:
Please remember to use WikiFormatting.
pymol will be updated to a newer version soon; see #45721. Maybe that will
help.
--
Ticket URL: <https://trac.macports.org/ticket/46007#comment:1>
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