[MacPorts] #51277: hdf5-18 +cxx+hl+openmpi+szip does not compile

MacPorts noreply at macports.org
Fri Apr 29 17:08:24 PDT 2016


#51277: hdf5-18 +cxx+hl+openmpi+szip does not compile
-----------------------+--------------------------------
 Reporter:  smasson@…  |      Owner:  macports-tickets@…
     Type:  defect     |     Status:  new
 Priority:  Normal     |  Milestone:
Component:  ports      |    Version:  2.3.4
 Keywords:             |       Port:  hdf5-18
-----------------------+--------------------------------
 hdf5-18 is not compiling because of the option +openmpi. [[BR]]
 In this case, it looks that configure is not able to find the compiler
 that is wrapped into openmpi. [[BR]]
 There is my main.log file:

 {{{
 version:1
 :msg:clean --->  Computing dependencies for netcdf:info:clean
 .:debug:clean netcdf has no conflicts
 :debug:clean Searching for dependency: cmake
 :debug:clean Found Dependency: receipt exists for cmake
 :debug:clean Searching for dependency: gcc48
 :debug:clean Found Dependency: receipt exists for gcc48
 :debug:clean Searching for dependency: libgcc
 :debug:clean Found Dependency: receipt exists for libgcc
 :debug:clean Searching for dependency: openmpi-gcc48
 :debug:clean Found Dependency: receipt exists for openmpi-gcc48
 :debug:clean Searching for dependency: hdf5-18
 :debug:clean Found Dependency: receipt exists for hdf5-18
 :debug:clean Searching for dependency: curl
 :debug:clean Found Dependency: receipt exists for curl
 :msg:clean
 :debug:main Executing org.macports.main (netcdf)
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 503
 :debug:main Skipping completed org.macports.archivefetch (netcdf)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:fetch fetch phase started at Fri Apr 29 16:01:34 PDT 2016
 :notice:fetch --->  Fetching distfiles for netcdf
 :debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
 :debug:fetch compilers.enforce_c list:
 :debug:fetch compilers.enforce_fortran list:
 :debug:fetch compilers.enforce_some_fortran list:
 :debug:fetch Executing proc-pre-org.macports.fetch-fetch-1
 :debug:fetch openmpi-gcc48 is installed with the following variants:
 +fortran
 :debug:fetch   required: fortran, forbidden:
 :debug:fetch   accepted
 :debug:fetch Executing proc-pre-org.macports.fetch-fetch-2
 :debug:fetch mpi.enforce_variant list: hdf5-18
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: , forbidden:
 :debug:fetch   accepted
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: mpich, forbidden:
 :debug:fetch   rejected, because required variant mpich is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: mpich_devel, forbidden:
 :debug:fetch   rejected, because required variant mpich_devel is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: openmpi, forbidden:
 :debug:fetch   accepted
 :debug:fetch compilers.enforce_c list: hdf5-18
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: , forbidden:
 :debug:fetch   accepted
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: clang33, forbidden:
 :debug:fetch   rejected, because required variant clang33 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: clang34, forbidden:
 :debug:fetch   rejected, because required variant clang34 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: clang35, forbidden:
 :debug:fetch   rejected, because required variant clang35 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: clang36, forbidden:
 :debug:fetch   rejected, because required variant clang36 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: clang37, forbidden:
 :debug:fetch   rejected, because required variant clang37 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: clang38, forbidden:
 :debug:fetch   rejected, because required variant clang38 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: dragonegg33, forbidden:
 :debug:fetch   rejected, because required variant dragonegg33 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: dragonegg34, forbidden:
 :debug:fetch   rejected, because required variant dragonegg34 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: gcc44, forbidden:
 :debug:fetch   rejected, because required variant gcc44 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: gcc45, forbidden:
 :debug:fetch   rejected, because required variant gcc45 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: gcc46, forbidden:
 :debug:fetch   rejected, because required variant gcc46 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: gcc47, forbidden:
 :debug:fetch   rejected, because required variant gcc47 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: gcc48, forbidden:
 :debug:fetch   rejected, because required variant gcc48 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: gcc49, forbidden:
 :debug:fetch   rejected, because required variant gcc49 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: gcc5, forbidden:
 :debug:fetch   rejected, because required variant gcc5 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: gcc6, forbidden:
 :debug:fetch   rejected, because required variant gcc6 is missing
 :debug:fetch hdf5-18 is installed with the following variants:
 +cxx+hl+openmpi+szip
 :debug:fetch   required: llvm, forbidden:
 :debug:fetch   rejected, because required variant llvm is missing
 :error:fetch Install hdf5-18 +gcc48
 :error:fetch org.macports.fetch for port netcdf returned: hdf5-18 +gcc48
 not installed
 :debug:fetch Error code: NONE
 :debug:fetch Backtrace: hdf5-18 +gcc48 not installed
     while executing
 "proc-pre-org.macports.fetch-fetch-2 org.macports.fetch"
     ("eval" body line 1)
     invoked from within
 "eval $pre $targetname"
 :info:fetch Warning: targets not executed for netcdf: org.macports.install
 org.macports.fetch org.macports.checksum org.macports.extract
 org.macports.patch org.macports.configure org.macports.build
 org.macports.destroot
 :notice:fetch Please see the log file for port netcdf for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_netcdf/netcdf/main.log

 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/51277>
MacPorts <https://www.macports.org/>
Ports system for OS X


More information about the macports-tickets mailing list