Revision: 72870 http://trac.macports.org/changeset/72870 Author: ryandesign@macports.org Date: 2010-10-29 00:09:11 -0700 (Fri, 29 Oct 2010) Log Message: ----------- tophat: new port, version 1.1.1; see #26991 Added Paths: ----------- trunk/dports/science/tophat/ trunk/dports/science/tophat/Portfile Added: trunk/dports/science/tophat/Portfile =================================================================== --- trunk/dports/science/tophat/Portfile (rev 0) +++ trunk/dports/science/tophat/Portfile 2010-10-29 07:09:11 UTC (rev 72870) @@ -0,0 +1,32 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 +# $Id$ + +PortSystem 1.0 + +name tophat +version 1.1.1 +categories science biology +platforms darwin +maintainers gmail.com:haroldpimentel + +description a fast splice junction mapper for RNA-Seq reads + +long_description TopHat is ${description}. It aligns RNA-Seq reads to \ + mammalian-sized genomes using the ultra high-throughput \ + short read aligner Bowtie, and then analyzes the mapping \ + results to identify splice junctions between exons. + +homepage http://tophat.cbcb.umd.edu/ +master_sites ${homepage}downloads/ + +checksums sha1 4671094ce142820ed2d4ba8a57eb787e215d2d3e \ + rmd160 b758a9f9d8e758a146ecac4dc21db9d154fb3faf + +use_parallel_build no + +depends_lib port:zlib \ + port:samtools \ + port:bowtie + +# samtools and bowtie are not universal +universal_variant no Property changes on: trunk/dports/science/tophat/Portfile ___________________________________________________________________ Added: svn:keywords + Id Added: svn:eol-style + native