November 2012 - macports-tickets - lists.macosforge.org

[MacPorts] #29868: atlas port install fails with: Error: Target org.macports.build returned: shell command failed
by MacPorts 14 Dec '12

14 Dec '12

#29868: atlas port install fails with: Error: Target org.macports.build returned: shell command failed -----------------------------+---------------------------------------------- Reporter: jim@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: | Port: atlas -----------------------------+---------------------------------------------- While attempting to install the port 'glade3', the dependency port 'atlas' failed to build. To eliminate this may have been a known issue, we ran a 'port sync', and 'port selfupdate'. But even after this, the 'port install atlas' command still failed with the same error. The error message displayed in the terminal window is below. The log file referenced in the error is attached. --------- ERROR --------------- bash-3.2# ./port install atlas ---> Computing dependencies for atlas ---> Building atlas Error: Target org.macports.build returned: shell command failed (see log for details) Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log Error: Status 1 encountered during processing. To report a bug, see <http://guide.macports.org/#project.tickets> -- Ticket URL: <https://trac.macports.org/ticket/29868> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #30337: atlas @3.9.37 build error
by MacPorts 14 Dec '12

14 Dec '12

#30337: atlas @3.9.37 build error ---------------------------------+------------------------------------------ Reporter: fukuda@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.0 Keywords: | Port: ---------------------------------+------------------------------------------ {{{ :info:build :info:build BEGIN STAGE 2-4-2: CacheEdge DETECTION at 14:21 :info:build make -f Makefile INSTALL_LOG/atlas_csNKB.h pre=c 2>&1 | ./xatlas_tee INSTALL_LOG/cMMCACHEEDGE.LOG :info:build make[1]: *** [build] Error 255 :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work/atlas-3.9.37/build' :info:build make: *** [build] Error 2 :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work/atlas-3.9.37/build' :info:build shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work/atlas-3.9.37/build" && /usr/bin/make -w build " returned error 2 :error:build Target org.macports.build returned: shell command failed (see log for details) :debug:build Backtrace: shell command failed (see log for details) while executing "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "$procedure $targetname" :info:build Warning: the following items did not execute (for atlas): org.macports.activate org.macports.build org.macports.destroot org.macports.install :notice:build Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/main.log }}} -- Ticket URL: <https://trac.macports.org/ticket/30337> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #29474: atlas took me a very long time (about 17 hours!) to build on a macbook pro 8, 3 (i7 2.3 GHz)
by MacPorts 14 Dec '12

14 Dec '12

#29474: atlas took me a very long time (about 17 hours!) to build on a macbook pro 8,3 (i7 2.3 GHz) ------------------------------------------------+--------------------------- Reporter: pierre-marie.gandoin@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: very long building | Port: atlas ------------------------------------------------+--------------------------- atlas took me a very long time (about 17 hours!) to build on a macbook pro 8,3 (i7 2.3 GHz) -- Ticket URL: <https://trac.macports.org/ticket/29474> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #29562: Latest version of Atlas fails to build
by MacPorts 14 Dec '12

14 Dec '12

#29562: Latest version of Atlas fails to build ---------------------------------+------------------------------------------ Reporter: mcs@… | Owner: macports-tickets@… Type: defect | Status: new Priority: High | Milestone: Component: ports | Version: 1.9.2 Keywords: atlas build fail | Port: atlas ---------------------------------+------------------------------------------ atlas fails to build on macbook pro snow leopard. -- Ticket URL: <https://trac.macports.org/ticket/29562> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #28758: fail to build atlas in i7 mac
by MacPorts 14 Dec '12

14 Dec '12

#28758: fail to build atlas in i7 mac ------------------------------+--------------------------------------------- Reporter: high07@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.9.2 Keywords: | Port: ------------------------------+--------------------------------------------- To set up py26-nltk, I was trying to setup atlas as it is a dependency for nltk. However, it constantly fails, although I tried most things suggested by related thread. I am not sure what should I do for this. any help will be greatly appreciated. sudo port clean --all atlas Password: ---> Cleaning atlas sudo port install atlas ---> Computing dependencies for atlas ---> Fetching atlas ---> Attempting to fetch atlas3.9.37.tar.bz2 from http://voxel.dl.sourceforge.net/math-atlas ---> Attempting to fetch lapack-3.3.0.tgz from http://www.netlib.org/lapack ---> Verifying checksum(s) for atlas ---> Extracting atlas ---> Applying patches to atlas ---> Configuring atlas ---> Building atlas Error: Target org.macports.build returned: shell command failed (see log for details) Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log Error: Status 1 encountered during processing. To report a bug, see <http://guide.macports.org/#project.tickets> -- Ticket URL: <https://trac.macports.org/ticket/28758> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #36911: petsc @ petsc-3.3-p3 +openmpi configure failure
by MacPorts 14 Dec '12

14 Dec '12

#36911: petsc @ petsc-3.3-p3 +openmpi configure failure -----------------------+-------------------------------- Reporter: dustman@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: | Port: -----------------------+-------------------------------- Installation of petsc fails during the configuration phase. Snippet of log message is (full log is attached): :info:configure *******************************************************************************:info:configure UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): :info:configure ------------------------------------------------------------------------------- :info:configure Incomplete LAPACK install? Perhaps lapack package is installed - but lapack-dev/lapack-devel is required.:info:configure ******************************************************************************* :info:configure :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_petsc/petsc/work/petsc-3.3-p3" && ./configure --prefix=/opt/local --prefix=/opt/local/lib/petsc --with- mpi=1 --with-clanguage=C++ --download-ml --download-metis --download- parmetis --download-blacs --download-scalapack --download-mumps --download-ptscotch --with-hdf5-dir=/opt/local --with-yaml-dir=/opt/local --with-cc=/opt/local/bin/openmpicc --with-cxx=/opt/local/bin/openmpicxx --with-fc=/opt/local/bin/openmpif90 --with- mpiexec=/opt/local/bin/openmpiexec --COPTFLAGS="-O2" --CXXOPTFLAGS="-O2" --FOPTFLAGS="-O2" --LDFLAGS="-L/opt/local/lib" --CFLAGS="-O2" --CXXFLAGS="-O2" --FFLAGS="-lstdc++" :info:configure Exit code: 1:error:configure org.macports.configure for port petsc returned: configure failure: command execution failed -- Ticket URL: <https://trac.macports.org/ticket/36911> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #35542: petsc: :info:configure Fortran could not successfully link C++ objects
by MacPorts 14 Dec '12

14 Dec '12

#35542: petsc: :info:configure Fortran could not successfully link C++ objects ------------------------------------+--------------------------------------- Reporter: jmstephensjr@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: | Port: petsc ------------------------------------+--------------------------------------- Attempting to upgrade from ''petsc @3.3-p0_0''. Upgrade preceded by ''selfupdate'' and ''clean --all petsc''. Software stack as follows: macports version 2.1.2, Xcode version 3.2.6, and Mac OS X version 10.6.8. By the way, ''libyaml @0.1.4_1'' installed just fine. (I think this is a new dependency.) -- Ticket URL: <https://trac.macports.org/ticket/35542> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #37065: error when installing py27-netcdf4: 'mpi.h' file not found
by MacPorts 12 Dec '12

12 Dec '12

#37065: error when installing py27-netcdf4: 'mpi.h' file not found -------------------------------+-------------------------------- Reporter: freezingmariner@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.1.2 Keywords: mpi | Port: py27-netcdf4 -------------------------------+-------------------------------- The installation of py27-netcdf4 crashes due to an mpi issue. I have openmpi installed for all the dependent packages. i.e.: {{{ :debug:main openmpi 1.6.3_0 +gcc47+threads is active :debug:main netcdf 4.2.1.1_0 +dap+hdf4+netcdf4+openmpi is active :debug:main hdf5-18 1.8.9_2 +cxx+fortran+openmpi+szip+threadsafe is active }}} The installation gives the following error: {{{ :info:build clang: netCDF4.c :info:build In file included from netCDF4.c:274: :info:build /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found :info:build # include <mpi.h> }}} -- Ticket URL: <https://trac.macports.org/ticket/37065> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #22247: though, it's installed, python can't find pyqt4
by MacPorts 12 Dec '12

12 Dec '12

#22247: though, it's installed, python can't find pyqt4 -----------------------------+---------------------------------------------- Reporter: anatuss@… | Owner: macports-tickets@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 1.8.1 Keywords: | Port: PyQt4 -----------------------------+---------------------------------------------- Hi, I'm using epd because of chaco (unfortunately it isn't available on macports). Recently I've started using QtDesigner with the intention to convert it into python language. But it isn't available on the epd. Hence I installed it with macports. Everything works fine until I tried to convert. I'm not good at making binaries work out. (I'd be glad if anyone could tell me what to do.) {{{ ~> pyuic4-2.6 Traceback (most recent call last): File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /site-packages/PyQt4/uic/pyuic.py", line 4, in <module> from PyQt4 import QtCore ImportError: No module named PyQt4 }}} -- Ticket URL: <http://trac.macports.org/ticket/22247> MacPorts <http://www.macports.org/> Ports system for Mac OS

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[MacPorts] #34400: qore-devel: parser.h: No such file or directory
by MacPorts 10 Dec '12

10 Dec '12

#34400: qore-devel: parser.h: No such file or directory -------------------------------------+-------------------------------------- Reporter: ryandesign@… | Owner: davidnichols@… Type: defect | Status: new Priority: Normal | Milestone: Component: ports | Version: 2.0.4 Keywords: | Port: qore-devel -------------------------------------+-------------------------------------- qore-devel doesn't build: {{{ In file included from single-compilation-unit.cpp:1: parser.ypp:50:20: error: parser.h: No such file or directory In file included from single-compilation-unit.cpp:86: thread.cpp:62:2: warning: #warning Darwin cannot support more than 2560 threads, MAX_QORE_THREADS set to 2560 In file included from single-compilation-unit.cpp:2: scanner.cpp: In function 'int yy_get_next_buffer(void*)': scanner.cpp:6207: warning: comparison between signed and unsigned integer expressions In file included from single-compilation-unit.cpp:1: parser.ypp:50:20: error: parser.h: No such file or directory In file included from single-compilation-unit.cpp:86: thread.cpp:62:2: warning: #warning Darwin cannot support more than 2560 threads, MAX_QORE_THREADS set to 2560 In file included from single-compilation-unit.cpp:2: scanner.cpp: In function 'int yy_get_next_buffer(void*)': scanner.cpp:6207: warning: comparison between signed and unsigned integer expressions lipo: can't open input file: /var/tmp//ccuVGGEp.out (No such file or directory) make[4]: *** [single-compilation-unit.lo] Error 1 make[4]: Leaving directory `/opt/local/var/macports/build /_Users_rschmidt_macports_dports_lang_qore-devel/qore- devel/work/trunk/lib' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/opt/local/var/macports/build /_Users_rschmidt_macports_dports_lang_qore-devel/qore- devel/work/trunk/lib' make[2]: *** [all] Error 2 make[2]: Leaving directory `/opt/local/var/macports/build /_Users_rschmidt_macports_dports_lang_qore-devel/qore- devel/work/trunk/lib' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/opt/local/var/macports/build /_Users_rschmidt_macports_dports_lang_qore-devel/qore-devel/work/trunk' make: *** [all] Error 2 }}} -- Ticket URL: <https://trac.macports.org/ticket/34400> MacPorts <http://www.macports.org/> Ports system for Mac OS

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