[Xquartz-dev] molmol vs Lion

Jack Howarth howarth at bromo.med.uc.edu
Sun Aug 14 10:57:42 PDT 2011


On Sun, Aug 14, 2011 at 09:55:24AM -0700, Jeremy Huddleston wrote:
> Then that is certainly not a bug in X11.  Please report this to the molmol developers.

Jeremy,
   There is no active molmol development (ie it is abandonware). However, I would note that
this same issue occurred about 20 months ago and was fixed in one of the xorg updates at the 
time...

https://trac.macports.org/ticket/21835

Interestingly I don't see this problem with fink's molmol under SL (but do with Lion). I
believe I also saw this with recent MacPorts on SL as well though. So the problem seem
to have reappeared in recent xorg used in both MacPorts and Lion.
                     Jack

> 
> On Aug 13, 2011, at 6:30 PM, Jack Howarth wrote:
> 
> >   Does anyone understand what has changed in the Xquartz (now in Lion as X11)
> > which causes molmol to not display its widgets or menus? The issue seems to be
> > that the use of "< /dev/null" in the molmol startup script...
> > 
> > if [ "$input" = "-" -o -n "$nograph" ]; then 
> >    echo "LineBond solid 1  "  >>| $startmacro ; @PREFIX@/share/molmol/src/main/molmol $xopt 
> > else 
> >    echo "LineBond solid 1  "  >>| $startmacro ; @PREFIX@/share/molmol/src/main/molmol $xopt < /dev/null  
> > fi
> > 
> > is no longer tolerated under X11 in 10.7. Only if remove the use of "< /dev/null" does molmol
> > run normally.
> >         Jack
> > 
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> > 
> 
> 
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