July 2007 - macports-users - lists.macosforge.org

build error
by Don Stark 11 Jul '07

11 Jul '07

I'm working an a G4 mac running 10.4.10. I'm trying to build and install NCO. When the build gets to the stage of "make all" in the nco directory I receiving the error "internal link edit command failed". I'm not certain how to proceed. What does the community suggest? The full build output is attached below. -- --------------------------------------------------------------- Don Stark, PhD stark(a)ucar.edu NCAR, Boulder CO 303.497.2472 --------------------------------------------------------------- $ sudo /opt/local/bin/port install nco ---> Fetching expat ---> Attempting to fetch expat-2.0.1.tar.gz from http:// downloads.sourceforge.net/expat ---> Verifying checksum(s) for expat ---> Extracting expat ---> Configuring expat ---> Building expat with target all ---> Staging expat into destroot ---> Installing expat 2.0.1_0 ---> Activating expat 2.0.1_0 ---> Cleaning expat ---> Fetching libiconv ---> Attempting to fetch libiconv-1.11.tar.gz from http:// ftp.gnu.org/gnu/libiconv ---> Verifying checksum(s) for libiconv ---> Extracting libiconv ---> Configuring libiconv ---> Building libiconv with target all ---> Staging libiconv into destroot ---> Installing libiconv 1.11_4+darwin_8 ---> Activating libiconv 1.11_4+darwin_8 ---> Cleaning libiconv ---> Fetching gettext ---> Attempting to fetch gettext-0.16.1.tar.gz from http:// ftp.gnu.org/gnu/gettext ---> Verifying checksum(s) for gettext ---> Extracting gettext ---> Applying patches to gettext ---> Configuring gettext ---> Building gettext with target all ---> Staging gettext into destroot ---> Installing gettext 0.16.1_0 ---> Activating gettext 0.16.1_0 ---> Cleaning gettext ---> Fetching m4 ---> Attempting to fetch m4-1.4.9.tar.bz2 from http://ftp.gnu.org/ gnu/m4 ---> Verifying checksum(s) for m4 ---> Extracting m4 ---> Configuring m4 ---> Building m4 with target all ---> Staging m4 into destroot ---> Installing m4 1.4.9_0 ---> Activating m4 1.4.9_0 ---> Cleaning m4 ---> Fetching bison ---> Attempting to fetch bison-2.3.tar.bz2 from http://ftp.gnu.org/ gnu/bison ---> Verifying checksum(s) for bison ---> Extracting bison ---> Configuring bison ---> Building bison with target all ---> Staging bison into destroot ---> Installing bison 2.3_0 ---> Activating bison 2.3_0 ---> Cleaning bison ---> Fetching pkgconfig ---> Verifying checksum(s) for pkgconfig ---> Extracting pkgconfig ---> Configuring pkgconfig ---> Building pkgconfig with target all ---> Staging pkgconfig into destroot ---> Installing pkgconfig 0.21_0 ---> Activating pkgconfig 0.21_0 ---> Cleaning pkgconfig ---> Fetching zlib ---> Attempting to fetch zlib-1.2.3.tar.bz2 from http://www.zlib.net/ ---> Verifying checksum(s) for zlib ---> Extracting zlib ---> Applying patches to zlib ---> Configuring zlib ---> Building zlib with target all ---> Staging zlib into destroot ---> Installing zlib 1.2.3_1 ---> Activating zlib 1.2.3_1 ---> Cleaning zlib ---> Fetching curl ---> Attempting to fetch curl-7.16.2.tar.bz2 from http:// curl.haxx.se/download/ ---> Verifying checksum(s) for curl ---> Extracting curl ---> Configuring curl ---> Building curl with target all ---> Staging curl into destroot ---> Installing curl 7.16.2_0+darwin_8 ---> Activating curl 7.16.2_0+darwin_8 ---> Cleaning curl ---> Fetching libxml2 ---> Attempting to fetch libxml2-2.6.28.tar.gz from http:// xmlsoft.org/sources/ ---> Verifying checksum(s) for libxml2 ---> Extracting libxml2 ---> Configuring libxml2 ---> Building libxml2 with target all ---> Staging libxml2 into destroot ---> Installing libxml2 2.6.28_1 ---> Activating libxml2 2.6.28_1 ---> Cleaning libxml2 ---> Fetching openssl ---> Attempting to fetch openssl-0.9.8e.tar.gz from http:// www.openssl.org/source/ ---> Verifying checksum(s) for openssl ---> Extracting openssl ---> Applying patches to openssl ---> Configuring openssl ---> Building openssl with target all ---> Staging openssl into destroot ---> Installing openssl 0.9.8e_0+darwin_8 ---> Activating openssl 0.9.8e_0+darwin_8 ---> Cleaning openssl ---> Fetching libdap ---> Attempting to fetch libdap-3.7.5.tar.gz from ftp:// ftp.unidata.ucar.edu/pub/opendap/source/ ---> Attempting to fetch libdap-3.7.5.tar.gz from ftp:// ftp.unidata.ucar.edu/pub/opendap/source/o ld/ ---> Verifying checksum(s) for libdap ---> Extracting libdap ---> Configuring libdap ---> Building libdap with target all ---> Staging libdap into destroot ---> Installing libdap 3.7.5_0 ---> Activating libdap 3.7.5_0 ---> Cleaning libdap ---> Fetching gmp ---> Attempting to fetch gmp-4.2.1.tar.bz2 from http://ftp.gnu.org/ gnu/gmp ---> Verifying checksum(s) for gmp ---> Extracting gmp ---> Configuring gmp ---> Building gmp with target all ---> Staging gmp into destroot ---> Running ranlib on static libraries ---> Installing gmp 4.2.1_4+test ---> Activating gmp 4.2.1_4+test ---> Cleaning gmp ---> Fetching mpfr ---> Attempting to fetch patch01 from http://www.mpfr.org/mpfr-2.2.1/ ---> Attempting to fetch patch02 from http://www.mpfr.org/mpfr-2.2.1/ ---> Attempting to fetch patch03 from http://www.mpfr.org/mpfr-2.2.1/ ---> Attempting to fetch patch04 from http://www.mpfr.org/mpfr-2.2.1/ ---> Attempting to fetch patch05 from http://www.mpfr.org/mpfr-2.2.1/ ---> Attempting to fetch mpfr-2.2.1.tar.bz2 from http://www.mpfr.org/ mpfr-2.2.1/ ---> Verifying checksum(s) for mpfr ---> Extracting mpfr ---> Applying patches to mpfr ---> Configuring mpfr ---> Building mpfr with target all ---> Staging mpfr into destroot ---> Installing mpfr 2.2.1_1+darwin_8 ---> Activating mpfr 2.2.1_1+darwin_8 ---> Cleaning mpfr ---> Fetching gcc40 ---> Attempting to fetch gcc-core-4.0.4.tar.bz2 from ftp:// gcc.gnu.org/pub/gcc/releases/gcc-4.0.4 / ---> Attempting to fetch gcc-fortran-4.0.4.tar.bz2 from ftp:// gcc.gnu.org/pub/gcc/releases/gcc-4. 0.4/ ---> Attempting to fetch gcc-g++-4.0.4.tar.bz2 from ftp:// gcc.gnu.org/pub/gcc/releases/gcc-4.0.4/ ---> Attempting to fetch gcc-java-4.0.4.tar.bz2 from ftp:// gcc.gnu.org/pub/gcc/releases/gcc-4.0.4 / ---> Attempting to fetch gcc-objc-4.0.4.tar.bz2 from ftp:// gcc.gnu.org/pub/gcc/releases/gcc-4.0.4 / ---> Verifying checksum(s) for gcc40 ---> Extracting gcc40 ---> Configuring gcc40 ---> Building gcc40 with target profiledbootstrap ---> Staging gcc40 into destroot ---> Installing gcc40 4.0.4_0+darwin_8 ---> Activating gcc40 4.0.4_0+darwin_8 ---> Cleaning gcc40 ---> Fetching libnc-dap ---> Attempting to fetch libnc-dap-3.7.0.tar.gz from ftp:// ftp.unidata.ucar.edu/pub/opendap/sourc e/ ---> Verifying checksum(s) for libnc-dap ---> Extracting libnc-dap ---> Applying patches to libnc-dap ---> Configuring libnc-dap ---> Building libnc-dap with target all ---> Staging libnc-dap into destroot ---> Installing libnc-dap 3.7.0_1 ---> Activating libnc-dap 3.7.0_1 ---> Cleaning libnc-dap ---> Fetching netcdf ---> Attempting to fetch netcdf-3.6.2.tar.bz2 from ftp:// ftp.unidata.ucar.edu/pub/netcdf/ ---> Verifying checksum(s) for netcdf ---> Extracting netcdf ---> Configuring netcdf ---> Building netcdf with target all ---> Staging netcdf into destroot ---> Installing netcdf 3.6.2_0 ---> Activating netcdf 3.6.2_0 ---> Cleaning netcdf ---> Fetching perl5.8 ---> Attempting to fetch perl-5.8.8.tar.bz2 from http://www.cpan.org/ src/5.0/ ---> Verifying checksum(s) for perl5.8 ---> Extracting perl5.8 ---> Applying patches to perl5.8 ---> Configuring perl5.8 ---> Building perl5.8 with target all ---> Staging perl5.8 into destroot ---> Installing perl5.8 5.8.8_0+darwin_8 ---> Activating perl5.8 5.8.8_0+darwin_8 ---> Cleaning perl5.8 ---> Fetching udunits ---> Attempting to fetch udunits.tar.Z from ftp:// ftp.unidata.ucar.edu/pub/udunits/ ---> Verifying checksum(s) for udunits ---> Extracting udunits ---> Configuring udunits ---> Building udunits with target all ---> Staging udunits into destroot ---> Installing udunits 1.12.4_0 ---> Activating udunits 1.12.4_0 ---> Cleaning udunits ---> Fetching nco ---> Attempting to fetch nco-3.1.9.tar.gz from http:// nco.sourceforge.net/src/ ---> Verifying checksum(s) for nco ---> Extracting nco ---> Applying patches to nco ---> Configuring nco ---> Building nco with target all Error: Target com.apple.build returned: shell command " cd "/opt/ local/var/db/dports/build/_opt_lo cal_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dports_sc ience_nco/work/nco-3.1.9" && make all " returned error 2 Command output: gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/ malloc -I/opt/local/include -I /opt/local/include/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 - std=c99 -D_BSD_SOURCE -c nco_var_l st.c -o nco_var_lst.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CXX --preserve-dup-deps -- tag=CC --mode=compile gcc -DHAVE_C ONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/local/include - I/opt/local/include/libnc-da p -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c -o nco_var_rth.lo nco_var_rth.c gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/ local/include -I/opt/local/inclu de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c nco_var_rth.c -fno-commo n -DPIC -o .libs/nco_var_rth.o In file included from nco_var_rth.h:20, from nco_var_rth.c:9: /opt/local/include/netcdf.h:95:1: warning: "NC_64BIT_OFFSET" redefined <command line>:1:1: warning: this is the location of the previous definition gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/ local/include -I/opt/local/inclu de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c nco_var_rth.c -o nco_var_ rth.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CXX --preserve-dup-deps -- tag=CC --mode=compile gcc -DHAVE_C ONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/local/include - I/opt/local/include/libnc-da p -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c -o nco_var_scv.lo nco_var_scv.c gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/ local/include -I/opt/local/inclu de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c nco_var_scv.c -fno-commo n -DPIC -o .libs/nco_var_scv.o In file included from nco_var_scv.h:20, from nco_var_scv.c:9: /opt/local/include/netcdf.h:95:1: warning: "NC_64BIT_OFFSET" redefined <command line>:1:1: warning: this is the location of the previous definition gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/ local/include -I/opt/local/inclu de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c nco_var_scv.c -o nco_var_ scv.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CXX --preserve-dup-deps -- tag=CC --mode=compile gcc -DHAVE_C ONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/local/include - I/opt/local/include/libnc-da p -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c -o nco_var_utl.lo nco_var_utl.c gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/ local/include -I/opt/local/inclu de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c nco_var_utl.c -fno-commo n -DPIC -o .libs/nco_var_utl.o In file included from nco_var_utl.h:26, from nco_var_utl.c:9: /opt/local/include/netcdf.h:95:1: warning: "NC_64BIT_OFFSET" redefined <command line>:1:1: warning: this is the location of the previous definition gcc -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include/malloc -I/opt/ local/include -I/opt/local/inclu de/libnc-dap -DNC_64BIT_OFFSET -fno-common -O2 -std=c99 -D_BSD_SOURCE -c nco_var_utl.c -o nco_var_ utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CXX --preserve-dup-deps -- tag=CC --mode=link gcc -fno-commo n -O2 -std=c99 -D_BSD_SOURCE -L/opt/local/lib -o libnco.la -rpath / opt/local/lib -release 3.1.9 nco_att_utl.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnv_arm.lo nco_cnv_cs m.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_lmt.lo nco_lst_utl.lo nco_mmr.lo nco_m sa.lo nco_mss_val.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_prn.lo nco_rec_var.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sng_utl.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth. lo nco_var_scv.lo nco_var_utl.lo -ludunits -lresolv -lintl -lm -lnc- dap -L/opt/local/lib -lnc-dap -L/opt/local/lib -ldap -ldapclient -L/opt/local/lib -lcurl -L/opt/ local/lib -L/opt/local/lib -l z -L/opt/local/lib -lxml2 -lz -lpthread -L/opt/local/lib -liconv -lm - lpthread -ludunits g++ -dynamiclib -single_module ${wl}-undefined ${wl}dynamic_lookup - o .libs/libnco-3.1.9.dylib .l ibs/nco_att_utl.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/ nco_cnf_dmn.o .libs/nco_cnf_typ.o .lib s/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/ nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_ fl_utl.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_mmr.o .libs/ nco_msa.o .libs/nco_mss_val.o . libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/ nco_prn.o .libs/nco_rec_var.o .libs/nco_rt h_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/ nco_sng_utl.o .libs/nco_var_ avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/ nco_var_scv.o .libs/nco_var_utl.o -L/opt/loca l/lib -ludunits -lresolv /opt/local/lib/libintl.dylib -lm /opt/local/ lib/libz.dylib /opt/local/lib /libnc-dap.dylib /opt/local/lib/libdap.dylib /opt/local/lib/ libdapclient.dylib /opt/local/lib/libc url.dylib -lz /opt/local/lib/libxml2.dylib -lz -lpthread /opt/local/ lib/libiconv.dylib -lm -lpthre ad -ludunits -install_name /opt/local/lib/libnco-3.1.9.dylib ld: flag: -undefined dynamic_lookup can't be used with MACOSX_DEPLOYMENT_TARGET environment variab le set to: 10.1 /usr/bin/libtool: internal link edit command failed make[3]: *** [libnco.la] Error 1 make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 Error: Status 1 encountered during processing.

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Auth for RSYNC proxy
by Geoff Gillett 11 Jul '07

11 Jul '07

Hi All, I know I can configure MACports to use a proxy by exporting RSYNC_PROXY http_proxy and ftp_proxy, but the proxy here requires authorisation how do I set the auth details? cheers Geoff

1 0

xmfract 1.4 source mirror issues
by Jason M 11 Jul '07

11 Jul '07

I have not filed a bug on this, but please consider adding http://spanky.fractint.org/pub/fractals/programs/unix/ as a mirror for master site http://spanky.triumf.ca/pub/fractals/programs/unix/ which appears to be down. Also, the portfile seems to be failing over to older named servers that are not answering: ---> Attempting to fetch xmfract_1-4_tar.gz from http://distfiles-od.opendarwin.org/xmfract ---> Attempting to fetch xmfract_1-4_tar.gz from http://distfiles-msn.opendarwin.org/xmfract ---> Attempting to fetch xmfract_1-4_tar.gz from http://distfiles-od.opendarwin.org/ ---> Attempting to fetch xmfract_1-4_tar.gz from http://distfiles-msn.opendarwin.org/ Thanks. - Jason

2 1

How do I heed compile warnings
by Malcolm Fitzgerald 11 Jul '07

11 Jul '07

Hi, Building claws-mail I got lots of messages like this symbol _UI_OpenSSL used from dynamic library /usr/lib/libcrypto.0.9.7.dylib(ui_openssl.o) not from earlier dynamic library /opt/local/lib/libcrypto.0.9.8.dylib(ui_openssl.o) I solved it by moving the libs out of /usr/lib while I built the application. When I ran it it said it couldn't go because those libs weren't present, so I've put them back. It worked, I'm using claws-mail to write this. What is the best way to resolve these issues? How can I do it so that everything is being built inside /opt/local ? malcolm

3 4

wanted: sqlite3 3.4.0 port
by Chris Eich 10 Jul '07

10 Jul '07

MacPorts' sqlite3 version is still 3.3.13, but version 3.4.0 was released on June 18th. Is someone working on upgrading this? If not, how can I help? Chris

2 1

Re: MacPorts 1.5.0 and binary packaging / New improved Guide
by Ryan Schmidt 10 Jul '07

10 Jul '07

On Jul 10, 2007, at 07:41, Anders F Björklund wrote: > markd wrote: > >> http://homepage.mac.com/duling/macports/guide.html >> >> Comments still welcome on the Guide so far. It needs some color >> css work >> and other css formatting, but I'm focusing on content and >> readability. > > There are some common typos in it like "OS X" (Mac OS X) and > "Xwindows" > (X Window System) and it should probably be less Apple/Mac OS X > centric > (i.e. should mention explicitly that 2.1-2.5 applies to Mac OS X, > and say > something instead of "Apple-supplied" - like vendor-supplied, etc > etc...) [snip] I would counter that being Apple- and Mac-centric is a good thing. The project name was deliberately changed from DarwinPorts to MacPorts to emphasize the fact that it's designed for Mac users. MacPorts has so far not been so easy for the typical non-UNIX-geek Mac user to understand, so I would consider being Mac-specific in the documentation to be a good thing. I'm not sure if anything non-Mac- centric needs to be said in the documentation, other than at most a sentence in the introduction stating that the project is designed for Macs, that it may work on other OSes, but that this is not guaranteed. I haven't actually looked at the guide yet, but wanted to make the above comments anyway.

3 2

Re: flagpoll Portfile for consideration in MacPorts
by Doug McCorkle 10 Jul '07

10 Jul '07

On Jul 10, 2007, at 1:36 AM, Ryan Schmidt wrote: > > On Jul 9, 2007, at 15:57, Doug McCorkle wrote: > >> Attached is a Portfile for flagpoll https:// >> realityforge.vrsource.org/view/FlagPoll . Please let me know if >> there is anything else that needs to be done for its inclusion in >> MacPorts. Thanks. > > I think you should be using the python24 or python25 portgroup. It > would simplify the portfile. > I am still learning all the details of Portfiles so do not understand what a portgroup is. Could you provide more details on what I need to do to make flagpoll part of the python portgroup? > Also, we have a python category. Though there are ports that use a > python portgroup that aren't in the python category. I don't use > python software, so I'm not sure what the rules are there, just > wanted to point out that there is such a category. Ports in that > category should have names that begin with "py-" (for 2.4) or > "py25-" (for 2.5). Perhaps a MacPorts python user can provide > guidance on what needs to go in that category and what can be > elsewhere. > > OK. I am happy to change the category to whatever you think the best home for the port is. Doug

1 1

mysql5: is it running and how can I tell?
by paul beard 10 Jul '07

10 Jul '07

My guess is that it isn't. And I don't know why. Using ps gives me this. root 47 0.0 0.1 27884 816 ?? Ss 10:46PM 0:00.04/opt/local/bin/daemondo --label=mysql5 --start-cmd /opt/local/etc/LaunchDaemons/org.macports.mysql5/mysql5.wrapper start ; --stop-cmd /opt/local/etc/LaunchDaemons/org.macports.mysql5/mysql5.wrapper stop ; --restart-cmd /opt/local/etc/LaunchDaemons/org.macports.mysql5/mysql5.wrapper restart ; --pid=/opt/local/var/mysql.pid running the script by hand gives me this. /opt/local/etc/LaunchDaemons/org.macports.mysql5/mysql5.wrapper start Starting MySQL/opt/local/share/mysql5/mysql/mysql.server: line 159: kill: (580) - No such process the offending line 159? 152 wait_for_pid () { 153 i=0 154 while test $i -ne $service_startup_timeout ; do 155 sleep 1 156 case "$1" in 157 'created') 158 test -s $pid_file && i='' && break 159 kill -0 $2 || break # if the program goes away, stop waiting 160 ;; 161 'removed') and I get these messages now: Workaround Bonjour: Unknown error: 0 I don't think they are anything to do with mysql, perhaps apache2 since it doesn't do zeroconf stuff like the vendor-supplied httpd. -- Paul Beard / www.paulbeard.org/ <paulbeard@gmail.com/paulbeard@mac.com>

3 3

How do I change mail pref?
by Samuel V. Green III 10 Jul '07

10 Jul '07

I can't find the link to change my mail delivery preferences for the macports mailing list? Thanks for a link! Samuel.

2 1

Macports download - macosforge.org down
by Eric Donkersloot 10 Jul '07

10 Jul '07

Hi, I need the latest macports dmg urgently, however the macosforge.org server seems completely unreachable. Could somebody else provide me with a download link please ? Much appreciated ! Kind Regards, Eric Met vriendelijke groet / Kind regards, Eric -- Eric Donkersloot Amsterdam, The Netherlands eric.donkersloot(a)gmail.com

2 1