July 2007 - macports-users - lists.macosforge.org

Kerberos5 depends on gnupg but not gnupg2
by Tabitha McNerney 22 Jul '07

22 Jul '07

Hello all, As I was reviewing and auditing my MacPorts dependency chain, I realized that the kerberos5 port depends on gnupg. However, gnupg seems to be a bit ancient and I would think deprecated by gnupg2. Would that be my imagination or is there a good reason to continue having kerberos5 depending on gnupg? Or is there a successor in MacPorts to kerberos5 which I may be unaware of? Much thanks, T.M.

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Checksum failure with ncbi_tools
by Chris Doucette 22 Jul '07

22 Jul '07

Hi, I've been trying to install ncbi_tools and get a checksum error, namely Error: Checksum (md5) mismatch for ncbi.tar.gz Error: Target org.macports.checksum returned: Unable to verify file checksums Error: Status 1 encountered during processing. I've manually downloaded the file by FTP from the source site (ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/) and it downloads and expands fine, without corruption, and it apparently hasn't been altered in about five years, so I'm assuming there's some problem on the macports side rather than it being a corrupted file or a stealth update. Is there a way I can force the installer to use the expanded archive I downloaded myself and skip the checksum? Thanks, - Chris Doucette

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Failure installing gnome-user-docs
by McGarry Vince 22 Jul '07

22 Jul '07

Everything is fine until making the gnome-accessibility-guide. Lots of allocation errors, but certainly not for lack of space. Once past this, I should be very close. The desktop is now working, albeit roughly at this point. Vince McGarry %------------ Making all in gnome2-accessibility-guide if ! test -d en_GB/; then mkdir en_GB/; fi if [ -f "C/gnome-access-guide.xml" ]; then d="../"; else d="/opt/ local/var/macports/build/ _opt_local_var_macports_sources_rsync.macports.org_release_ports_gnome_g nome-user-docs/work/gnome-user-docs-2.18.1/gnome2-accessibility- guide/"; fi; \ (cd en_GB/ && \ `which xml2po` -e -p \ "${d}en_GB/en_GB.po" \ "${d}C/gnome-access-guide.xml" > gnome-access-guide.xml.tmp && \ cp gnome-access-guide.xml.tmp gnome-access-guide.xml && rm -f gnome-access-guide.xml.tmp) Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug (null)(null)Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug (null)(null)Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug (null)file:///opt/local/share/xml/docbook/4.1.2/dbpoolx.mod:5411: parser error : out of memory error  ^ Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug (null)file:///opt/local/share/xml/docbook/4.1.2/dbpoolx.mod:5411: parser error : out of memory error  ^ Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug (null)file:///opt/local/share/xml/docbook/4.1.2/dbpoolx.mod:5411: parser error : out of memory error  ^ Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug (null)file:///opt/local/share/xml/docbook/4.1.2/dbpoolx.mod:5411: parser error : out of memory error  ^ Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug Python(7467) malloc: *** vm_allocate(size=1069056) failed (error code=3) Python(7467) malloc: *** error: can't allocate region Python(7467) malloc: *** set a breakpoint in szone_error to debug (null)file:///opt/local/share/xml/docbook/4.1.2/dbpoolx.mod:5411: parser error : out of memory error  ^ Traceback (most recent call last): File "/opt/local/bin/xml2po", line 856, in ? doSerialize(doc) File "/opt/local/bin/xml2po", line 589, in doSerialize outtxt += doSerialize(child) File "/opt/local/bin/xml2po", line 583, in doSerialize (starttag, content, endtag, translation) = processElementTag (node, repl, 1) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 496, in processElementTag myrepl.append(processElementTag(child, myrepl, 1)) File "/opt/local/bin/xml2po", line 496, in processElementTag myrepl.append(processElementTag(child, myrepl, 1)) File "/opt/local/bin/xml2po", line 496, in processElementTag myrepl.append(processElementTag(child, myrepl, 1)) File "/opt/local/bin/xml2po", line 496, in processElementTag myrepl.append(processElementTag(child, myrepl, 1)) File "/opt/local/bin/xml2po", line 529, in processElementTag replaceNodeContentsWithText(node, translation) File "/opt/local/bin/xml2po", line 390, in replaceNodeContentsWithText newelem = newnode.getRootElement() File "/opt/local/lib/python2.4/site-packages/libxml2.py", line 4093, in getRootElement if ret is None:raise treeError('xmlDocGetRootElement() failed') libxml2.treeError: xmlDocGetRootElement() failed make[1]: *** [en_GB/gnome-access-guide.xml] Error 1 make: *** [all-recursive] Error 1 Error: Target org.macports.build returned: shell command " cd "/opt/ local/var/macports/build/ _opt_local_var_macports_sources_rsync.macports.org_release_ports_gnome_g nome-user-docs/work/gnome-user-docs-2.18.1" && make all " returned error 2 Command output: outtxt += doSerialize(child) File "/opt/local/bin/xml2po", line 583, in doSerialize (starttag, content, endtag, translation) = processElementTag (node, repl, 1) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 500, in processElementTag (starttag, content, endtag, translation) = processElementTag (child, myrepl, 0) File "/opt/local/bin/xml2po", line 496, in processElementTag myrepl.append(processElementTag(child, myrepl, 1)) File "/opt/local/bin/xml2po", line 496, in processElementTag myrepl.append(processElementTag(child, myrepl, 1)) File "/opt/local/bin/xml2po", line 496, in processElementTag myrepl.append(processElementTag(child, myrepl, 1)) File "/opt/local/bin/xml2po", line 496, in processElementTag myrepl.append(processElementTag(child, myrepl, 1)) File "/opt/local/bin/xml2po", line 529, in processElementTag replaceNodeContentsWithText(node, translation) File "/opt/local/bin/xml2po", line 390, in replaceNodeContentsWithText newelem = newnode.getRootElement() File "/opt/local/lib/python2.4/site-packages/libxml2.py", line 4093, in getRootElement if ret is None:raise treeError('xmlDocGetRootElement() failed') libxml2.treeError: xmlDocGetRootElement() failed make[1]: *** [en_GB/gnome-access-guide.xml] Error 1 make: *** [all-recursive] Error 1 Warning: the following items did not execute (for gnome-user-docs): org.macports.activate org.macports.build org.macports.destroot org.macports.install Error: Status 1 encountered during processing.

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IRC channel the same now that MacPorts 1.5 changes namespace?
by Tabitha McNerney 22 Jul '07

22 Jul '07

Hi, Maybe a silly question, but with the namespace transition in MacPorts 1.5now complete and moved away from "DarwinPorts" and "OpenDarwin", I am wondering if the IRC channel that one can join in for MacPorts discussion and help is still IRC #opendarwin or if the name of this channel has also changed to reflect the MacPorts namespace? Thanks much MacPorts! -T.M.

2 2

Fwd: uname problem on Mac OS X
by TjL 21 Jul '07

21 Jul '07

I sent a message to the bug-coreutils(a)gnu.org about the problem I had getting uname -p to work. Here's the reply I received (FWIW) Begin forwarded message: > Date: July 19, 2007 9:46:32 PM EDT > Subject: Re: uname problem on Mac OS X > > TjL wrote: >> uname -p: i386 >> guname -p: unknown > > The GNU uname program simply reports the result from the kernel system > call uname(2). > > man 2 uname > > If the kernel does not report the processor type then GNU uname does > not have any information to work with. Some vendors compile programs > specifically for a single architecture and hard code in a value but > this is not portable. The 'uname -p' option is not one of the > standard options and I recommend that use of it is avoided. > > http://www.opengroup.org/onlinepubs/009695399/utilities/uname.html > > Actually use of uname for any purpose other than returning the system > name is quite troublesome for portability. I would avoid it in all > cases other than when you know that it is going to return meaningful > data.

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GNOME status
by Randall Wood 21 Jul '07

21 Jul '07

ALCON: Some notes on GNOME ports: file-roller: fix for the documentation build failure is in the port repository; sudo port sync should pick it up within 12 hours libgnomekbd: a temporary fix affecting port glib2 is awaiting approval or denial from the glib2 port maintainer - building libgnomekbd from the GNOME svn trunk reportedly does not suffer from this problem, so the next release of libgnomekbd should have a long term fix. gtk-sharp and the other GNOME/C# ports are outdated and will need to be updated/fixed before anything workable is produced. Within the next week, all GNOME Python ports will be updated to use python25 instead of python24. Randall Wood rhwood(a)mac.com http://shyramblings.blogspot.com "The rules are simple: The ball is round. The game lasts 90 minutes. All the rest is just philosophy."

2 1

installation of cdrdao port fails
by Christoph Ludwig 21 Jul '07

21 Jul '07

Hi, today I encountered the problem with cdrdao discussed in <URL:http://trac.macports.org/projects/macports/ticket/12094>. At the end of the discussion, bytestorm uploaded a patch that is supposed to fix this issue. Unfortunately, cdrdao is without a maintainer, so the patch just sits there. Can someone with commit privileges have a look, please, and commit the patch if it seems ok? Thanks! Christoph -- FH Worms - University of Applied Sciences Fachbereich Informatik / Telekommunikation Erenburgerstr. 19, 67549 Worms, Germany

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Wanted: sqlite-3.4.1
by Lars Hoss 21 Jul '07

21 Jul '07

Hi all, SQLite 3.4.1 was released yesterday (July, 20th). This release fixes a possible database corruption bug: "This release fixes a bug in VACUUM that can lead to database corruption. The bug was introduced in version 3.3.14. Upgrading is recommended for all users." And kudos to all macport developers. Great job! Yours, Lars

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How about an icon for MacPorts ?
by Yves de Champlain 21 Jul '07

21 Jul '07

http://trac.macosforge.org/projects/macports/ticket/12337 yves

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Help for a OSX bundle
by Yves de Champlain 21 Jul '07

21 Jul '07

Hi I may not be on the best list to ask, but it's the list I'm on I have made a gimp.app port with a nice gimp.icns. The app has its icon alright but the xcf files don't (I'm using the same icon for both). I have searched a lot and feel like I'm missing a very stupid thing. Double-click a xcf will open it in gimp alright while drag n drop will not work. Here is my Info.plist and thanks for having a look. yves Pkginfo = APPLGiMP Info.plist : <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE plist PUBLIC "-//Apple Computer//DTD PLIST 1.0//EN" "http:// www.apple.com/DTDs/PropertyList-1.0.dtd"> <plist version="1.0"> <dict> <key>CFBundleDevelopmentRegion</key> <string>English</string> <key>CFBundleDocumentTypes</key> <array> <dict> <key>CFBundleTypeExtensions</key> <array> <string>xcf</string> <string>XCF</string> </array> <key>CFBundleTypeIconFile</key> <string>Gimp.icns</string> <key>CFBundleTypeMIMETypes</key> <array> <string>image/x-xcf</string> </array> <key>CFBundleTypeName</key> <string>Gimp Image</string> <key>CFBundleTypeOSTypes</key> <array> <string>XCF </string> </array> <key>CFBundleTypeRole</key> <string>Editor</string> <key>LSIsAppleDefaultForType</key> <true/> <key>LSItemContentTypes</key> <array> <string>org.gimp.xcf</string> </array> </dict> </array> <key>CFBundleExecutable</key> <string>Gimp</string> <key>CFBundleGetInfoString</key> <string>2.3.18, © 2001-2007 The GIMP Team</string> <key>CFBundleIconFile</key> <string>Gimp.icns</string> <key>CFBundleIdentifier</key> <string>org.gimp.Gimp</string> <key>CFBundleInfoDictionaryVersion</key> <string>6.0</string> <key>CFBundleName</key> <string>Gimp</string> <key>CFBundlePackageType</key> <string>APPL</string> <key>CFBundleShortVersionString</key> <string>2.3.18</string> <key>CFBundleSignature</key> <string>GiMP</string> <key>CFBundleVersion</key> <string>2.3.18</string> <key>NSHumanReadableCopyright</key> <string>© 2001-2007 The GIMP Team</string> <key>UTExportedTypeDeclarations</key> <array> <dict> <key>UTTypeConformsTo</key> <array> <string>public.data</string> <string>public.image</string> </array> <key>UTTypeDescription</key> <string>Gimp Image</string> <key>UTTypeIconFile</key> <string>Gimp.icns</string> <key>UTTypeIdentifier</key> <string>org.gimp.xcf</string> <key>UTTypeReferenceURL</key> <string>http://www.gimp.org/</string> <key>UTTypeTagSpecification</key> <dict> <key>com.apple.ostype</key> <string>XCF </string> <key>public.filename-extension</key> <array> <string>xcf</string> <string>XCF</string> </array> <key>public.mime-type</key> <array> <string>image/x-xcf</string> </array> </dict> </dict> </array> </dict> </plist>

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