April 2007 - macports-users - lists.macosforge.org

sudo broken after port install
by Chris Drackett 17 Apr '07

17 Apr '07

I just installed port, then mysql5 +server, svn and py-docutils py-mx on a brand new mac. However, now when I open a new shell and type "sudo" i get: Calvin:~ cwd$ sudo sudo: can't stat /opt/local/etc/sudoers: No such file or directory what did I break, and how do I fix it! :) Thanks!

3 2

sqlite3 errors?
by Avi Carmi 17 Apr '07

17 Apr '07

any ideas? -avi /usr/bin/gcc-4.0 -dynamiclib ${wl}-flat_namespace ${wl}-undefined $ {wl}suppress -o .libs/libsqlite3.0.8.6.dylib .libs/alter.o .libs/ analyze.o .libs/attach.o .libs/auth.o .libs/btree.o .libs/ build.o .libs/callback.o .libs/complete.o .libs/date.o .libs/ delete.o .libs/expr.o .libs/func.o .libs/hash.o .libs/insert.o .libs/ loadext.o .libs/main.o .libs/opcodes.o .libs/os.o .libs/ os_unix.o .libs/os_win.o .libs/os_os2.o .libs/pager.o .libs/ parse.o .libs/pragma.o .libs/prepare.o .libs/printf.o .libs/ random.o .libs/select.o .libs/table.o .libs/tokenize.o .libs/ trigger.o .libs/update.o .libs/util.o .libs/vacuum.o .libs/ vdbe.o .libs/vdbeapi.o .libs/vdbeaux.o .libs/vdbefifo.o .libs/ vdbemem.o .libs/where.o .libs/utf.o .libs/legacy.o .libs/vtab.o - lpthread -install_name /opt/local/lib/libsqlite3.0.dylib -Wl,- compatibility_version -Wl,9 -Wl,-current_version -Wl,9.6 (cd .libs && rm -f libsqlite3.0.dylib && ln -s libsqlite3.0.8.6.dylib libsqlite3.0.dylib) (cd .libs && rm -f libsqlite3.dylib && ln -s libsqlite3.0.8.6.dylib libsqlite3.dylib) ar cru .libs/libsqlite3.a alter.o analyze.o attach.o auth.o btree.o build.o callback.o complete.o date.o delete.o expr.o func.o hash.o insert.o loadext.o main.o opcodes.o os.o os_unix.o os_win.o os_os2.o pager.o parse.o pragma.o prepare.o printf.o random.o select.o table.o tokenize.o trigger.o update.o util.o vacuum.o vdbe.o vdbeapi.o vdbeaux.o vdbefifo.o vdbemem.o where.o utf.o legacy.o vtab.o ranlib: file: .libs/libsqlite3.a(loadext.o) has no symbols ranlib: file: .libs/libsqlite3.a(os_win.o) has no symbols ranlib: file: .libs/libsqlite3.a(os_os2.o) has no symbols ranlib .libs/libsqlite3.a ranlib: file: .libs/libsqlite3.a(loadext.o) has no symbols ranlib: file: .libs/libsqlite3.a(os_win.o) has no symbols ranlib: file: .libs/libsqlite3.a(os_os2.o) has no symbols creating libsqlite3.la (cd .libs && rm -f libsqlite3.la && ln -s ../libsqlite3.la libsqlite3.la) ./libtool --mode=link /usr/bin/gcc-4.0 -O2 -I. -I./src -DNDEBUG - DTHREADSAFE=1 -DSQLITE_THREAD_OVERRIDE_LOCK=-1 - DSQLITE_ENABLE_LOCKING_STYLE=1 -DSQLITE_OMIT_LOAD_EXTENSION=1 - DHAVE_READLINE=1 -I/opt/local/include/ - DSQLITE_ENABLE_LOCKING_STYLE=1 -lpthread \ -o sqlite3 ./src/shell.c libsqlite3.la \ -L/opt/local/lib -lreadline /usr/bin/gcc-4.0 -O2 -I. -I./src -DNDEBUG -DTHREADSAFE=1 - DSQLITE_THREAD_OVERRIDE_LOCK=-1 -DSQLITE_ENABLE_LOCKING_STYLE=1 - DSQLITE_OMIT_LOAD_EXTENSION=1 -DHAVE_READLINE=1 -I/opt/local/include/ -DSQLITE_ENABLE_LOCKING_STYLE=1 -o .libs/sqlite3 ./src/ shell.c ./.libs/libsqlite3.dylib -lpthread -L/opt/local/lib -lreadline /usr/bin/ld: warning can't open dynamic library: /opt/local/var/db/ dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib referenced from: /opt/local/lib/libreadline.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: Undefined symbols: _tgetent referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tgetflag referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tgetnum referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tgetstr referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tputs referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tgoto referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib collect2: ld returned 1 exit status gnumake: *** [sqlite3] Error 1 Error: Target com.apple.build returned: shell command " cd "/opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_databases_sqlite3/work/sqlite-3.3.15" && gnumake all " returned error 2 Command output: /usr/bin/gcc-4.0 -O2 -I. -I./src -DNDEBUG - DTHREADSAFE=1 -DSQLITE_THREAD_OVERRIDE_LOCK=-1 - DSQLITE_ENABLE_LOCKING_STYLE=1 -DSQLITE_OMIT_LOAD_EXTENSION=1 -c ./ src/vtab.c -o vtab.o >/dev/null 2>&1 ./libtool --mode=link /usr/bin/gcc-4.0 -O2 -I. -I./src -DNDEBUG - DTHREADSAFE=1 -DSQLITE_THREAD_OVERRIDE_LOCK=-1 - DSQLITE_ENABLE_LOCKING_STYLE=1 -DSQLITE_OMIT_LOAD_EXTENSION=1 -o libsqlite3.la alter.lo analyze.lo attach.lo auth.lo btree.lo build.lo callback.lo complete.lo date.lo delete.lo expr.lo func.lo hash.lo insert.lo loadext.lo main.lo opcodes.lo os.lo os_unix.lo os_win.lo os_os2.lo pager.lo parse.lo pragma.lo prepare.lo printf.lo random.lo select.lo table.lo tokenize.lo trigger.lo update.lo util.lo vacuum.lo vdbe.lo vdbeapi.lo vdbeaux.lo vdbefifo.lo vdbemem.lo where.lo utf.lo legacy.lo vtab.lo -lpthread \ -rpath /opt/local/lib -version-info "8:6:8" /usr/bin/gcc-4.0 -dynamiclib ${wl}-flat_namespace ${wl}-undefined $ {wl}suppress -o .libs/libsqlite3.0.8.6.dylib .libs/alter.o .libs/ analyze.o .libs/attach.o .libs/auth.o .libs/btree.o .libs/ build.o .libs/callback.o .libs/complete.o .libs/date.o .libs/ delete.o .libs/expr.o .libs/func.o .libs/hash.o .libs/insert.o .libs/ loadext.o .libs/main.o .libs/opcodes.o .libs/os.o .libs/ os_unix.o .libs/os_win.o .libs/os_os2.o .libs/pager.o .libs/ parse.o .libs/pragma.o .libs/prepare.o .libs/printf.o .libs/ random.o .libs/select.o .libs/table.o .libs/tokenize.o .libs/ trigger.o .libs/update.o .libs/util.o .libs/vacuum.o .libs/ vdbe.o .libs/vdbeapi.o .libs/vdbeaux.o .libs/vdbefifo.o .libs/ vdbemem.o .libs/where.o .libs/utf.o .libs/legacy.o .libs/vtab.o - lpthread -install_name /opt/local/lib/libsqlite3.0.dylib -Wl,- compatibility_version -Wl,9 -Wl,-current_version -Wl,9.6 (cd .libs && rm -f libsqlite3.0.dylib && ln -s libsqlite3.0.8.6.dylib libsqlite3.0.dylib) (cd .libs && rm -f libsqlite3.dylib && ln -s libsqlite3.0.8.6.dylib libsqlite3.dylib) ar cru .libs/libsqlite3.a alter.o analyze.o attach.o auth.o btree.o build.o callback.o complete.o date.o delete.o expr.o func.o hash.o insert.o loadext.o main.o opcodes.o os.o os_unix.o os_win.o os_os2.o pager.o parse.o pragma.o prepare.o printf.o random.o select.o table.o tokenize.o trigger.o update.o util.o vacuum.o vdbe.o vdbeapi.o vdbeaux.o vdbefifo.o vdbemem.o where.o utf.o legacy.o vtab.o ranlib: file: .libs/libsqlite3.a(loadext.o) has no symbols ranlib: file: .libs/libsqlite3.a(os_win.o) has no symbols ranlib: file: .libs/libsqlite3.a(os_os2.o) has no symbols ranlib .libs/libsqlite3.a ranlib: file: .libs/libsqlite3.a(loadext.o) has no symbols ranlib: file: .libs/libsqlite3.a(os_win.o) has no symbols ranlib: file: .libs/libsqlite3.a(os_os2.o) has no symbols creating libsqlite3.la (cd .libs && rm -f libsqlite3.la && ln -s ../libsqlite3.la libsqlite3.la) ./libtool --mode=link /usr/bin/gcc-4.0 -O2 -I. -I./src -DNDEBUG - DTHREADSAFE=1 -DSQLITE_THREAD_OVERRIDE_LOCK=-1 - DSQLITE_ENABLE_LOCKING_STYLE=1 -DSQLITE_OMIT_LOAD_EXTENSION=1 - DHAVE_READLINE=1 -I/opt/local/include/ - DSQLITE_ENABLE_LOCKING_STYLE=1 -lpthread \ -o sqlite3 ./src/shell.c libsqlite3.la \ -L/opt/local/lib -lreadline /usr/bin/gcc-4.0 -O2 -I. -I./src -DNDEBUG -DTHREADSAFE=1 - DSQLITE_THREAD_OVERRIDE_LOCK=-1 -DSQLITE_ENABLE_LOCKING_STYLE=1 - DSQLITE_OMIT_LOAD_EXTENSION=1 -DHAVE_READLINE=1 -I/opt/local/include/ -DSQLITE_ENABLE_LOCKING_STYLE=1 -o .libs/sqlite3 ./src/ shell.c ./.libs/libsqlite3.dylib -lpthread -L/opt/local/lib -lreadline /usr/bin/ld: warning can't open dynamic library: /opt/local/var/db/ dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib referenced from: /opt/local/lib/libreadline.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: Undefined symbols: _tgetent referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tgetflag referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tgetnum referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tgetstr referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tputs referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib _tgoto referenced from libreadline expected to be defined in /opt/ local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_devel_ncurses/work/destroot/opt/local/lib/libncurses.5.dylib collect2: ld returned 1 exit status gnumake: *** [sqlite3] Error 1 Warning: the following items did not execute (for sqlite3): com.apple.destroot com.apple.build Error: Unable to upgrade port: 1 -- Avi Carmi avi(a)maron.com (818) 707-7007

2 2

Recursive uninstall?
by David Kulp 16 Apr '07

16 Apr '07

Howdy. Is there a way that I can recursively uninstall a port and its dependencies? Somehow I have gnome-session installed with a zillion dependencies -- most of which have no other dependents. I don't know why it bugs me, but I want to uninstall all this mess that I don't use. a) Is there a hidden uninstall option that recursively removes dependencies if said port has no other dependents? b) Assuming not, can someone point me to the database describing the dependencies, so I could write a script to traverse the dependency tree? Recursively calling "port deps" is slow. If anyone else is interested in this script, I'll post it. Thanks

2 1

MacPorts py-gsl installation failure
by Jochen Küpper 16 Apr '07

16 Apr '07

Hi, sorry to come in with so many problems, I am generally quite please with MacPorts. However, it seems that the Python/Science ports I am trying to install these days somehow don't work for me... Anyway, that's what I get: > sudo port install py-gsl ---> Fetching py-gsl ---> Verifying checksum(s) for py-gsl ---> Extracting py-gsl ---> Configuring py-gsl ---> Building py-gsl with target build Error: Target com.apple.build returned: shell command "cd "/opt/local/ var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_python_py-gsl/work/pygsl-0.2.0" && CFLAGS="-I/opt/local/include - I/opt/local/include/gsl" LDFLAGS=-L/opt/local/lib /opt/local/bin/ python2.4 setup.py build" returned error 1 Command output: swig_src/block_wrap.c: In function 'SWIG_ConvertPtr': swig_src/block_wrap.c:450: warning: suggest explicit braces to avoid ambiguous 'else' swig_src/block_wrap.c: In function '_wrap_gsl_vector_complex_set_all': swig_src/block_wrap.c:16391: warning: unused variable 'tmp2' swig_src/block_wrap.c: In function '_wrap_gsl_matrix_complex_set_all': swig_src/block_wrap.c:17102: warning: unused variable 'tmp2' swig_src/block_wrap.c: At top level: swig_src/block_wrap.c:170: warning: 'SWIG_TypeDynamicCast' defined but not used swig_src/block_wrap.c:182: warning: 'SWIG_TypeName' defined but not used swig_src/block_wrap.c:188: warning: 'SWIG_TypeQuery' defined but not used swig_src/block_wrap.c:370: warning: 'SWIG_addvarlink' defined but not used swig_src/block_wrap.c:423: warning: 'SWIG_ConvertPtr' defined but not used swig_src/block_wrap.c:515: warning: 'SWIG_ConvertPacked' defined but not used /usr/bin/gcc-4.0 -bundle -undefined dynamic_lookup -L/opt/local/lib - I/opt/local/include -I/opt/local/include/gsl build/temp.darwin-8.9.1- i386-2.4/swig_src/block_wrap.o -L/opt/local/lib -Lbuild/ temp.darwin-8.9.1-i386-2.4 -lpygsl -lgsl -lgslcblas -lm -lpygsl -o build/lib.darwin-8.9.1-i386-2.4/pygsl/__block.so building '_siman' extension creating build/temp.darwin-8.9.1-i386-2.4/src /usr/bin/gcc-4.0 -fno-strict-aliasing -Wno-long-double -no-cpp- precomp -fno-common -fno-common -dynamic -DNDEBUG -g -O3 -Wall - Wstrict-prototypes -I/opt/local/include -I/opt/local/include/gsl - DSWIG_COBJECT_TYPES=1 -DNUMERIC=1 -DPYGSL_GSL_MAJOR_VERSION=1 - DPYGSL_GSL_MINOR_VERSION=9 -UNDEBUG -I/opt/local/include -IInclude - I. -I/opt/local/Library/Frameworks/Python.framework/Versions/2.4/ include/python2.4 -I/opt/local/include/python2.4 -c src/simanmodule.c -o build/temp.darwin-8.9.1-i386-2.4/src/simanmodule.o src/simanmodule.c: In function 'PyGSL_siman_efunc': src/simanmodule.c:129: error: array initialized from non-constant array expression src/simanmodule.c: In function 'PyGSL_siman_step': src/simanmodule.c:189: error: array initialized from non-constant array expression src/simanmodule.c: In function 'PyGSL_siman_metric': src/simanmodule.c:243: error: array initialized from non-constant array expression src/simanmodule.c: In function 'PyGSL_siman_print': src/simanmodule.c:302: error: array initialized from non-constant array expression src/simanmodule.c: In function 'PyGSL_siman_copy': src/simanmodule.c:352: error: array initialized from non-constant array expression src/simanmodule.c: In function 'PyGSL_siman_solve': src/simanmodule.c:551: error: array initialized from non-constant array expression error: command '/usr/bin/gcc-4.0' failed with exit status 1 Error: Status 1 encountered during processing. Greetings, Jochen -- Fritz-Haber-Institut der MPG -- Department of Molecular Physics Faradayweg 4-6 (C1.03) D-14195 Berlin, Germany phone: +49-30-84135686 fax: +49-30-84135892

2 4

dependencies on gcc4
by John Owens 16 Apr '07

16 Apr '07

I installed "R" yesterday and note that it has a dependency on "gcc40". I try to keep up to date with xcode and note that my xcode gcc is version 4.0.1. But installing R (not a huge package) also installed gcc (definitely a huge package, took many hours to build). I understand that MacPorts wants to install its own versions of some stuff (python, perl, etc.) and that makes sense for most packages. But for something like gcc, because of its size and because Apple's distribution is pretty good, I'd prefer to see it handled more like X11, as a "this package is already natively provided by the system and we should use it if available". JDO

2 2

XFree86_44
by Yves de Champlain 16 Apr '07

16 Apr '07

Hi Is there any use in keeping this port ? yves

4 4

What is in /opt/local/var/db/dports
by Markus Weimer 16 Apr '07

16 Apr '07

Hi, I just checked my system for places where I can get a few megabytes of diskspace back and found that /opt/local/var/db/dports contains quite a lot of files. Essentially all software packages I installed are there once again. Is it safe to delete them? Is there a general procedure to free as much space as possible while keeping the ports intact? Thanks in advance for any pointers, Markus

4 7

Stellarium seems broken.
by Kinross, Jeffrey 16 Apr '07

16 Apr '07

Greetings, Attempting to build Stellarium but it seems broken. Using 1.4.0 Attached is config.log Regards, - Jeff ---> Configuring stellarium checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking build system type... i686-apple-darwin8.9.1 checking host system type... i686-apple-darwin8.9.1 checking for gcc... /usr/bin/gcc-3.3 checking for C compiler default output file name... configure: error: C compiler cannot create executables See `config.log' for more details. Error: Target com.apple.configure returned: configure failure: shell command "cd "/opt/local/var/db/dports/build/ _opt_local_var_db_dports_sources_rsync.rsync.darwinports.org_dpupdate_dp orts_science_stellarium/work/stellarium-0.6.2" && CC=/usr/bin/gcc-3.3 CPP=/usr/bin/cpp-3.3 CXX=/usr/bin/g++-3.3 ./configure --prefix=/opt/ local --disable-sdltest --mandir=/opt/local/share/man" returned error 77 Command output: checking for a BSD-compatible install... /usr/bin/ install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking build system type... i686-apple-darwin8.9.1 checking host system type... i686-apple-darwin8.9.1 checking for gcc... /usr/bin/gcc-3.3 checking for C compiler default output file name... configure: error: C compiler cannot create executables See `config.log' for more details. Warning: the following items did not execute (for stellarium): com.apple.activate com.apple.configure com.apple.build com.apple.destroot com.apple.install Error: Status 1 encountered during processing.

2 4

Re: py-scipy: numpy vs. gcc problem (solved)
by Jochen Küpper 15 Apr '07

15 Apr '07

I've added my comments to this > http://trac.macosforge.org/projects/macports/ticket/11564 but I believe in the end this is a py-numpy bug, not one in py-scipy. Greetings, Jochen -- Fritz-Haber-Institut der MPG -- Department of Molecular Physics Faradayweg 4-6 (C1.03) D-14195 Berlin, Germany phone: +49-30-84135686 fax: +49-30-84135892

1 0

Re: iTerm
by Boey Maun Suang 15 Apr '07

15 Apr '07

Hi Jochen, > The .app seems to require Growl, however, which port cannot fetch It seems that growl.info currently has tarballs of the source only as far back as 0.7.4, and 0.7 is now only available via Subversion, so this port clearly has to be updated (though you probably realised that). I'm not able to do it just now, but if I get it working and am confident that I've done so correctly, I'll pick up maintenance. > By the way, are the plans for an mrxvt port? There might be now that you mention it :-) Kind regards, Maun Suang -- Boey Maun Suang (Boey is my surname) Email: boeyms(a)macports.org

8 8